barSeed - Barley Seed Development Database

Probe CUST_36377_PI390587928

Source Contig U35_1851

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36377_PI390587928	Hv_44K_v2	GCATAGACTCTTTTGGTCCGAAATTACTTGTCCCACAAATTGACATCTAGATATATTCAT	936	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371190	1134	2e-24	950 - 1009	100	60 / 60	plus	ABC05841 ABC05842
MLOC	MLOC_64947.1	640	2e-24	502 - 561	100	60 / 60	plus	ABC05842
JLOC1	JLOC1_42690.1	786	8e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_1851	1001	3e-25	937 - 996	100	60 / 60	plus

Contig Sequence (1001 bp)

>U35_1851 1001 Hv_44K_v2
GATTCTTCCTTGCAGCTCAGACAGCAGCCATTTCCTTCGGACTAGCGTCAACACACTGAG
CAATCCATCCATCACACGCACAGCGCAAGAGGTTTAATTAATCGTCCGAGAAGAGCAGAG
GAGTGAGCAAGGTAGCCATGGGGAGGTCTCCTTGCTGCGAGAAGATGGGGCTCAAGAGGG
GGCCGTGGACGGCGGAGGAGGACATGACCCTGGTGGCTCACATCGAGCAGCACGGCCACA
GCAACTGGCGGGCGCTGCCGAATCAGGCCGGCCTGCTGCGCTGCGGCAAGAGCTGTCGCC
TCCGGTGGATCAACTACCTGCGCCCCGACATCAAGCGCGGCAACTTCACCAGCGAGGAGG
AGGGCGCCATCATCCAGCTCCACGCCATGCTCGGCAACAGATGGTCCACCATTGCCGCCA
GGCTTCCTGGGAGGACGGACAACGAGATCAAGAACGTCTGGCACACACACCTCAAGAAGC
GACTCCAGTCCTCGTCCAAGCCGTCAGGCCAGGCAGCGCCTAAGCGCAAAGCCAAGAAGC
CTGCTATGGCTGCAGCGAGCACAGCCGATGGCTCGGCCTCCGTGCCAGTGTCGCCGGAGC
AACCCATCTCGTCGTCCGCCACCGATTACTCGATGGCATCGTCGTTGGAGAACACAGACA
GCTTTACATCGGAGGAGTTTCAGATTGAGGACAGCTTTTGGTCGGAGACACTTGCAATGA
CGGTGGACAACTCCGGTTCCCCGATGGACGCCGGCGTCACCTTGGGCGCCCAAGACAGTG
CATCGCCCTCGTCCAGCAACGACGAGGTGGACTTCTGGGACAGACTGTTCATGCAGGCTG
GCGAGGTGCAGAGTTTGTCTCACATTTAGGCAGAGGATATCGGCTCGGCTAGTTTCTTGT
TCATTTTATGTCTCTCAATATTATTTAAAGTCTTTGGCATAGACTCTTTTGGTCCGAAAT
TACTTGTCCCACAAATTGACATCTAGATATATTCATTTTTG

Homology of Contig U35_1851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41510.1	259	1e-98	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi3g49180.1	249	7e-113
Arabidopsis v10	AT1G06180.1	246	8e-69	\| Symbols: ATMYB13, ATMYBLFGN, MYB13 \| myb domain protein 13 \| chr1:1889510-1891089 FORWARD LENGTH=246