barSeed - Barley Seed Development Database

Probe ABC05841

Source Contig ABC05841

barSeed

Links

Affymetrix Source Sequence (1831 bp)

>ABC05841 1831
CGACGTCGACTCGGTGACCGTGGATGAGACGGAGCGCTCGGGCGAGGACACGGGCGCCGC
CGCCGCCGCCCTGGCGGTCAGCGCGTTGAGGTTCCTCATCTTGACCTTGCCGTCGCGCTT
CCTCGGCGCCGCCGCCGCCGCCGGCGGCTTCTTGCGCTTCTTGGCGGCGCCGGCCTCCTC
TTGCTGCTCCTGCGCGCTGGGGTCGAGCCGCTTCTTGAGGTGGGTGTGCCACACGTTCTT
GATCTCGTTGTCCGTCCTCCCCGGCAGCCTGGCGGCAATCGCGGACCATCTGTTGCCGAG
CAGCTGGTGCAGCTGGATGATTGACTGCTCCTCCTCGTCGGAGAAGTTGCCGCGCTTGAT
GTCCGGCCGCAGGTAGTTGATCCACCGGAGCCGGCAGCTCTTGCCGCACCGCAGAAGCCC
GGCTTGCTTGGGCAGCGCGCGCCAGTTGCCGTGGCCGTGGCTGTGGATGTGTGCGACCAG
GATCTTGTCCTCCTCCGGCGTCCAGGGGCCCCTCTTCAGGCCCATCTTCTCGCAACACGG
CGCCCTCCCCATCTTCTCGATCCGGATGCGTGCGCGCGTGCGTGATGGATGCGCGAGTCC
CCTCTGTGCCTGTCTTTGACTCTTTGGGGGGAGAAGAGAAGAAGGGAGCACGGGCACGGC
TAGCCTGGCCGGGGTGCCTGTGGATGCCGCGGAGTGCAAGATCCTGGTCGCACACATCCA
CAGCCACGGCCACGGCAACTGGCGCGCGCTGCCCAAGCAAGCCGGGCTTCTGCGGTGCGG
CAAGAGCTGCCGGCTCCGGTGGATCAACTACCTGCGGCCGGACATCAAGCGCGGCAACTT
CTCCGACGAGGAGGAGCAGTCAATCATCCAGCTGCACCAGCTGCTCGGCAACAGATGGTC
CGCGATTGCCGCCAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACGTGTGGCACAC
CCACCTCAAGAAGCGGCTCGACCCCAGCGCGCAGGAGCAGCAAGAGGAGGCCGGCGCCGC
CAAGAAGCGCAAGAAGCCGCCGGCGGCGGCGGCGGCGCCGAGGAAGCGCGACGGCAAGGT
CAAGATGAGGAACCTCAACGCGCTGACCGCCAGGGCGGCGGCGGCGGCGCCCGTGTCCTC
GCCCGAGCGCTCCGTCTCATCCACGGTCACCGAGTCGACGTCGACCGCCTCGGCGGCGGC
GGAGCAGCACGGCAACTCGGGGAGCAGCTCCGCGTCCGCGTCCGCGTCCGTCAAGGAGGA
GTGCTTCACCTCGTCCGAGGAGTCGGAGGAGTTCCAGATCGACGAGAGCTTCTGGTCGGA
GACGCTGTCCATGCCGCTGGACGACCTCAACGACGTCTGCATGGAGCCCCACGACGCGTT
CGGCAAGCCCGACGGCGACATGGACTACTGGCTCAGACTGTTCATGGAGGGCGGCGGCGG
CAGCGGCAGCGGCAGCGACGACAACAACAACCATGACGGCGCGCTAGACTTGCCACAGAT
TTAGGCTCCTGATGAGATGATTTGATCGTTCTTTTTCTCTCTCTCTCTCTACATCTGCGT
GCGCCATCTTCGCTGCATCGGAGGGATTGCTAACAGGGAAGAGTTTCCGGCCCGCCCCGT
GGAGGAAACCAGTAGCCAGCCAGCAAGAACGCTGATCATGCGCCGGGTAGCTTTCTTCGA
TCCATTTTGGTTAGTCATTTACCTTGTTGTATAGAAGGATGATGATGAGAGATCAGTGTT
CAGTGATCGGAACCGATGCATTCTCTGTACTATCATGGAGTTTATCTGAAATGGAGTCTG
TCTGTCCGCTTTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK353929	1304	0.0	5 - 699	100	695 / 695	None	ABC05841 ABC05842
MLOC_73037.1	1912	2e-142	1117 - 1405	98	287 / 292	CUST_36376_PI390587928	ABC05841
MLOC_73037.2	1008	6e-143	617 - 906	98	288 / 293	None	ABC05841
MLOC_73038.1	519	3e-136	46 - 321	99	273 / 277	None	ABC05841
AK368657	915	5e-84	204 - 511	85	266 / 312	None	ABC05841 ABC05842
AK371190	1134	3e-82	191 - 498	85	266 / 313	CUST_36377_PI390587928	ABC05841 ABC05842
MLOC_43806.1	904	9e-77	138 - 438	84	259 / 307	None	ABC05841 ABC05842
AK369689	1661	2e-74	347 - 625	85	239 / 281	CUST_287_PI390587928	ABC05841 ABC05842 ABC09252
MLOC_53640.1	1232	2e-74	618 - 896	85	239 / 281	CUST_287_PI390587928	ABC05841 ABC05842 ABC09252
MLOC_71418.2	1691	1e-60	1080 - 1373	81	241 / 296	None	ABC05841 ABC05842
MLOC_71418.3	1693	2e-59	1080 - 1375	81	242 / 298	None	ABC05841 ABC05842
AK360378	1551	7e-68	251 - 598	80	284 / 353	None	ABC05841 ABC09250 ABC13879 ABC53019
MLOC_53640.3	1242	3e-61	740 - 994	84	214 / 256	CUST_287_PI390587928	ABC05841
MLOC_65957.1	2404	7e-53	326 - 532	85	178 / 209	CUST_15550_PI390587928	ABC05841 ABC09250 ABC09252 ABC53019
MLOC_65957.2	2474	7e-53	487 - 693	85	178 / 209	CUST_15550_PI390587928	ABC05841 ABC09250 ABC09252 ABC53019