barSeed - Barley Seed Development Database

Probe CUST_36374_PI390587928

Source Contig U35_1854

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36374_PI390587928	Hv_44K_v2	TAGAACACACAGGAAATCAATTGTAATTTTGTTTACTCCGCCGTCCACCAGCACCTGACC	492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41966.2	802	2e-24	741 - 800	100	60 / 60	plus	ABC04552
MLOC	AK369904	2451	6e-24	1949 - 2007	100	59 / 59	plus	ABC04548 ABC04552 ABC43241
MLOC	AK364353	3476	6e-24	2900 - 2958	100	59 / 59	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	MLOC_41966.1	320	6e-24	260 - 318	100	59 / 59	plus	ABC04552
MLOC	AK363297	4260	3e-21	3879 - 3938	97	58 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
MLOC	MLOC_42561.1	1382	3e-21	507 - 566	97	58 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	MLOC_42561.3	1005	3e-21	487 - 546	97	58 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	MLOC_42561.2	1476	3e-21	502 - 561	97	58 / 60	plus	ABC04548 ABC04552 ABC43241
JLOC1	JLOC1_27559.2	1468	2e-21	497 - 556	97	58 / 60	plus
Harvest21	ABC34240	661	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_1854	1080	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (1080 bp)

>U35_1854 1080 Hv_44K_v2
GGCAAATAAAGGTATGATATTTGCACAAGGTTGTTAAACTTATTAGTTTTTATTTGAGAT
GGATAATACAGATTTAAAATTAAGTGCATGCCCATGCCCTGTTTGCACAGAGTTATTAAG
CTTTTACTTTTCAGCAAAATGGAGGATCATTTATTTAAATTATGCAAGTACTTTCTATTC
ATTACGAACTCATAAAACTTTATTATAAAACTTATGTATATGTTGTATATATAATGTTTT
GTTAATTATGAAATCTGCACTTGCGTAGTACTTATGAAGGTGAATTTGTGATCACAAGTC
ATTGTTGTCAAGGTAGCAAGCACAATCATTGGGTCTCTTGTAGTTGTAGAGATTGACTAT
GGTACTGCTTGGTACATGGTTTCTTCATGAGGGAAACAATGAAACATGGTGCTAAGAAAT
ATTGTACTAGAAAACATGACGATTTCTAGGATGCCACATTATCAAAACAATGTGATGTAT
TGTTTTCTATTCTAGAACACACAGGAAATCAATTGTAATTTTGTTTACTCCGCCGTCCAC
CAGCACCTGACCGCTCCGCCCACCGCCTTTACTACCTGCACGCACACATGAGTCACCACG
CACTGCCTTCAGAATGTGCTTTCAAGAAGGGAAGTTGCTGAACAAAATGGAAGACGACGG
GCACGGTGCGGTGCACCTCTGCACCTCTTCGAGAGCGGATATGGTGGCGGGCGCGTAGTC
CAACAGCCGGAGCAATGGTTCCCTATAAGAGGGAAATTTCCATATGATTATTTTGGTACA
GAATTATGTGATGATGGAGGATGGAGCTGTCCTTTGAAGAATTGTTTAATGAACTAAAAA
GTAGAAACATCGTGTCTTGTTCATGTGCCAAATCAGCATTGCAATGCGCTGACTCATGTG
TGGCATCCGTCTATGTTGATTAATGGAACCTTTGATAATCAGTAGATGCATGCATCACCT
ATGATAATTAATATATGTCAGGTACAATATTTGTCCATGTGTTGTATTTAATTTGTAAAG
TCAATGTGTGTAGCACAATGAAACGGAAGAGGTTTAAGTGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1854 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None