barSeed - Barley Seed Development Database

Probe CUST_36371_PI390587928

Source Contig U35_1857

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36371_PI390587928	Hv_44K_v2	TCTCATTGGGCAAATAAAGGTTAAGCTCGAGATGAAACTTTTGGCGGAGATACAGTTTTG	228	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359765	2841	2e-24	2385 - 2444	100	60 / 60	plus	ABC04548 ABC04549 ABC04552 ABC43241
Harvest21	ABC04553	738	3e-25	424 - 483	100	60 / 60	minus
Harvest21	ABC04551	678	3e-25	391 - 450	100	60 / 60	minus
Harvest35	U35_1857	717	3e-25	229 - 288	100	60 / 60	plus

Contig Sequence (717 bp)

>U35_1857 717 Hv_44K_v2
ATATTTTAAGATCAAACGGCGAGCTCAGTTTGCACAGTCCTCCNCAATGACCATTTCAGA
GCCTGGACATAAGTAAATTTCTGTTCTCGTGTAATTTGAACTCCTACCGGTTCAGATTTC
AGCATTCCCTGCAATTCTTGATTTGCGTCGTGCTGCAGCACACATGGCTCGTCGTCCTAC
CTGCTTCTGTGCCCTCTACTTCTTCCCACAAGATTGAGTGGCATGGGTTCTCATTGGGCA
AATAAAGGTTAAGCTCGAGATGAAACTTTTGGCGGAGATACAGTTTTGATATACAACTTT
ACTTGGCTTTTAATCCATGTGGTACAGAATTATGTGATGATGGAGGATGGAGCTGTCCTT
TGAAGAATTGTTTAATGAACTAAAAAGTAGAAACATCGTGTCTTGTTCATGTGCCAAATC
AGCATTGCAATGCGCTGACTCATGTGTGGCATCCGTCTATGTTGATTAATGGAACCTTTG
ATAATCAGTAGATGCATGCATCACCTATGATAATTAATATATGTCAGGTACAATATTTGT
CCATGTGTTGTATTTAATTTGTAAAGTCAATGTGTGTAGCACAATGAAACGGAAGAGGTT
TAAGTGGTCCATCAACAATGCTCCCAAGGCAATAGCGTTGGAAGGGTGTCAAAACTCATC
AAGTTTTAAGTATATATATGCATTCAAAAAAATATAGGCNCCATAGCAACGCACGGG

Homology of Contig U35_1857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None