barSeed - Barley Seed Development Database

Probe CUST_36360_PI390587928

Source Contig U35_1869

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36360_PI390587928	Hv_44K_v2	CCTCCTTACTGAATCAGTCCCAAGAATATTAAGACTACTTCGGTGATCTGGCTCTTCAAA	2358	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43452.2	2006	6e-24	1932 - 1990	100	59 / 59	plus	ABC04810 ABC04811
JLOC1	JLOC1_28093.1	2386	3e-24	1937 - 1995	100	59 / 59	plus
Harvest21	ABC04810	766	3e-25	693 - 752	100	60 / 60	plus	ABC04810
Harvest35	U35_1869	2434	3e-25	2359 - 2418	100	60 / 60	plus

Contig Sequence (2434 bp)

>U35_1869 2434 Hv_44K_v2
CCGCTCTCCCCTCTCCTCTCCACGGCCTCCGCCTCCACCCTACGCCCCCAATCCGAGGCC
ACAACTTTTAAGGCGGGCAGTGCAGAAAGCGGAACGCCCAGCCATCCGAGTCCAGCGGGG
GCAGAGGAGAGGAGAGGAGAGGGGAGGAGAGCAGAGCGCGCGGGGGAGGCGGCGATGGCG
GTGGGCGCGAAGCTGCACCTCTCGTCGGCCGCCCGGCGCCCGACGCTGCCCCAGCTCCTG
GCCGTCGCGCTGCTCTGCTCGGCGTCCTACCTCGCCGGCGTCTGGCACCACGGCGGTGGC
TTCACCGCCGCCCCCTCGGCCGCCGCCGCAGGCGGCTCCCCCTCCCCCGTCTCCATCGCC
ACCACCTCCTCCGTCGCCTGCGTCTCCCCGACCCCGGCCGCACCACTCGACTTCGCGGCG
CACCACGCGGCGGACGAGGCGGAGGCGAAGGTCGCGCCGGCGCGGCGCGCGTACGGGGCG
TGCCCGGCCAAGTACTCCGAGTACACGCCGTGCGAGGACGTGGAGCGGTCGCTGCGGTTC
CCGCGGGACCGGCTCGTGTACCGGGAGCGGCACTGCCCGGCGGAGGGCGAGCGGCTGCGG
TGCCTCGTCCCGGCGCCCAAGGGGTACCGCAACCCGTTCCCGTGGCCGGCCAGCCGCGAC
GTCGCGTGGTTCGCCAACGTGCCGCACAAGGAGCTCACCGTGGAGAAGGCGGTGCAGAAC
TGGATCCACGTCGAGGGCGACAAGTTCCGCTTCCCGGGCGGCGGCACCATGTTCCCCCAC
GGCGCCGGCGCCTACATCGACGACATCGGCAACCTCATCCCCCTCCACGACGGATCCATC
CGCACCGCCCTCGACACCGGCTGCGGGGTGGCGAGCTGGGGAGCGTATCTGTTGTCACGC
AACATCCTGGCCATGTCGTTCGCTCCGCGGGACTCGCACGAGGCGCAGGTGCAGTTCGCG
CTGGAACGTGGGGTGCCGGCGATGATCGGGGTCCTCGCCTCCAACAGGCTCACCTATCCT
GCGCGCGCCTTCGACATGGCGCACTGCTCCCGCTGCCTAATCCCCTGGCAGCTCTACGAT
GGCCTGTACTTGATTGAGGTGGATCGCATTCTTCGTCCTGGGGGCTACTGGATCTTGTCC
GGACCACCGATCAACTGGAAGAAGCACTCCAAGGGGTGGCAGAGGACCAGGGAGGACCTG
AACGCAGAGCAGCAAGCCATTGAGTCAGTCGCCAAGAGCCTCTGCTGGAAGAAGATCAAG
GAGGTTGGCGACATTGCCATCTGGCAAAAGCCTACCAATCACATCCACTGCAAGGCTCTC
CGCAAAGTCGCCAAGTCCCCGCCATTCTGCTCGAATAAAAACCCAGATGCTGCCTGGTAC
GAGAAGATGGAGGCTTGTATAACTCCGCTACCGGAGGTGAGTGACATCAAGGAGGTCGCC
GGCGGTGAGCTGAAGAAGTGGCCACAGAGGCTCACCGCCGTGCCACCCAGGATTGCTAGT
GGCAGTTTTGAGGGGGTCACCGCCGAAATGTTCAACGAGGATACCAAGTTATGGAAGAAG
AGAGTGGGGCACTACAAGTCCGTGGTAAGTCAGTTTGGGCAGAAGGGCCGGTACCGCAAC
TTGCTTGATATGAATGCCCGCTTTGGCGGCTTCGCTGCGGCATTGGCGGGTGACCCTATG
TGGGTGATGAACATGGTCCCAACCATTGGAAATTCAACGACTCTTGGGGTGATATACGAG
CGTGGCCTCATTGGAAACTACCAAGACTGGTGCGAGGGCATGTCCACCTATCCCCGGACC
TACGACCTCATTCATGCTGATTCAGTTTTCAGTCTGTACAAGGACAGGTGTGAGATGGAC
ACCATCCTGCTGGAGATGGACAGGATCCTGAGGCCGGAGGGCACGGTGATCATCAGGGAC
GATGTGGACCTGCTAGTGAAGATAAAGAGCGTCGCGGACGGGATGAGATGGAATAGCCAG
ATCGTGGACCACGAAGACGGTCCGCTCGTCCGGGAGAAGCTCCTCCTTGTTGTGAAGACA
TACTGGACACTTGGGGACGAGAAACAATAGCGACGCCCCGAAATAAAGCATGAGAAACTG
AGAAAATTGACAGATACTGGGCAGATGTCACAACCGGCCTTCCTCTCACTGTGTTCGCCC
TGTGGTTTTGAAGTTTTATCTTGCTGGGTCATTCTTTTTGGTGAAAATAGTTAAACATAG
TGGAGACATGCCCAAGTATATGACAGATTTTGACATGGGAAGGACAGCCAGCCAGCCAAA
TGGGGCAGACAGAGATTTCATTATGTTTCTTGCTGTACAAAGGGTTGGTCATGTATAAGT
TCCCCTCGGCTCTTCTGTCCTCCTTACTGAATCAGTCCCAAGAATATTAAGACTACTTCG
GTGATCTGGCTCTTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g48230.2	647	protein\|dehydration response related protein, putative, expressed
Brachypodium v1_2	Bradi5g18800.1	644
Arabidopsis v10	AT4G00750.1	633	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:314405-317507 FORWARD LENGTH=633