barSeed - Barley Seed Development Database

Probe CUST_36319_PI390587928

Source Contig U35_6451

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36319_PI390587928	Hv_44K_v2	GACTTTGGTTTAGCAAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGGTAGTG	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50290.3	1324	2e-24	586 - 645	100	60 / 60	plus	ABC15052 ABC15796
MLOC	MLOC_50290.2	1123	2e-24	591 - 650	100	60 / 60	plus	ABC15052 ABC15796
MLOC	MLOC_50290.1	1277	2e-24	591 - 650	100	60 / 60	plus	ABC15052 ABC15796
JLOC1	JLOC1_32102.2	1212	8e-25	578 - 637	100	60 / 60	plus
JLOC1	JLOC1_32102.1	1117	8e-25	585 - 644	100	60 / 60	plus
Harvest21	ABC15796	1098	3e-25	411 - 470	100	60 / 60	plus	ABC15796
Harvest35	U35_6451	626	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_6451 626 Hv_44K_v2
GCCTCGTGCCGCACGTACGGGNGTGGTGTACAAGGGCCCGGGACAGGGCCACCAACGAGA
CCATCGCACTCAAGAAGATCCGCCTCGAGCAGGAGGACGAGGGCGTCCCCTCCACCGCCA
TCCGCGAGATCTCGCTCCTCAAGGAGATGCAGCACCGCAACATCGTCAAGCTGCACGATG
TTGTCCACAGCGAGAAGCGCATATGGCTCGTCTTCGAGTACCTGGATCTGGACCTGAAGA
AGTTCATGGACTCCTGCCCAGAGTTTGCCAAGAGTCCCGCCTTGATCAAGTCATACCTCT
ATCAGATACTCCGTGGCGTTGCTTATTGTCATTCTCATAGAGTTCTTCATCGAGATTTGA
AACCTCAGAATTTATTGATAGACCGGCGTACTAATGCACTGAAGCTTGCAGACTTTGGTT
TAGCAAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGGTAGTGACATTATGGT
ACAGAGCTCCAGAAATCCTTCTTGGAGCGAGGCAGTATTCCACACCAGTTGACGTGTGGT
CAGTGGGCTGTATCTTTGCAGAAATGGTGAACCAGAAGCCACTGTTCCCTGGCGATTCTG
AGATTGATGAATTATTTAAGATCTTC

Homology of Contig U35_6451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02680.3	276	2e-134	protein\|cyclin-dependent kinase A-1, putative, expressed
Brachypodium v1_2	Bradi1g77325.1	294	6e-137
Arabidopsis v10	AT3G48750.1	294	9e-125	\| Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 \| cell division control 2 \| chr3:18072238-18074296 FORWARD LENGTH=294