barSeed - Barley Seed Development Database

Probe CUST_36276_PI390587928

Source Contig U35_6495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36276_PI390587928	Hv_44K_v2	ATCCTGGAGACTCATATGTCAAAGGTGTTGAAAGCCGACGATGTGGATCTGATGACCATT	1171	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354960	2584	2e-24	1319 - 1378	100	60 / 60	plus	ABC06621 ABC15766
MLOC	AK363817	5986	2e-24	1314 - 1373	100	60 / 60	plus	ABC04362 ABC06621 ABC14088 ABC15766 ABC40605
MLOC	MLOC_65455.1	2402	2e-24	998 - 1057	100	60 / 60	plus	ABC06621 ABC15766
JLOC1	JLOC1_43076.2	2004	8e-25	824 - 883	100	60 / 60	plus
JLOC1	JLOC1_43076.1	2409	8e-25	1006 - 1065	100	60 / 60	plus
Harvest35	U35_6495	1466	3e-25	1172 - 1231	100	60 / 60	plus

Contig Sequence (1466 bp)

>U35_6495 1466 Hv_44K_v2
GCCGCCACCGGCTCCGGTCACCCGCCGGGCGGCTCGCCCTCCCCATCCCCATCTCCATCC
CATCCCCATCCCCACCCCCATGGCCTGGCGGCTCGCCCTCTCCAAGGCTGGAAGGCGGTC
GTCGAGTGTGATCTACAATGAGCTAGCGAGTACAAGTGCTTTCAGGACACCTGCAAACGG
CATTGGTGGAGTTCTTAAGGCGCTGCAAGAGAGAAGTAACCCAGAAAGGGTCGTGCAGAT
CTTCGAGAGCCAGCCTTCCTTACATAACAACTCTTTGGCTCTCTCCCAGTATGTGAAGGC
TCTTGTCGCCCTTGACAGGCTGGATGAAAGCCCGCTGCTTAAGACATTGCAAAGAGGAAT
TGCTAATTCAGCAAGGGAGGAAGAAGGGCTTAGTGGCATCCCAGCATTTCAAAGTGTTGG
TCGTACAACAAAAGATGGGGCTCTTGGTACTGCTGGTGCACCGGTTCACATGGTTGCATC
AAAGACAGGCCAATTCAAGGAGCAGCTTTGGCGTACCTTCCGGGGCATTGCACTCACTTT
CCTGGTAATCTCTGGCATTGGGGCTCTGATTGAAGATAGAGGAATCAGTAAAGGCCTTGG
ATTGCATGAGGAGGTTCAGCCAAGCTTGGATTCGAGCACAAAATTCAGTGATGTCAAGGG
GGTTGATGAAGCTAAAGCTGAACTTGAGGAAATAGTTCACTACCTACGAGATCCCAAGCG
TTTCACACGCCTTGGTGGCAAGCTTCCAAAAGGTGTTTTGCTTGTCGGCCCACCCGGGAC
AGGGAAAACCATGTTGGCAAGGGCCATCGCTGGGGAAGCTGGTGTTCCTTTCTTCTCCTG
CAGTGGCAGTGAATTTGAGGAGATGTTTGTGGGTGTCGGGGCAAGAAGAGTGAGGGATCT
CTTCAGTGCAGCAAAGAAGCGATCTCCTTGTATAATTTTCATTGACGAAATTGATGCAAT
TGGTGGGAGCAGAAACCCAAAAGATCAACAGTATGTGAAGATGACCTTGAACCAGTTGCT
TGTTGAGCTGGATGGCTTTAAGCAGAATGATGGGATAATTGTAATTGCAGCAACAAACTT
CCCCCAGTCACTGGATAAAGCCCTTGTAAGGCCTGGGCGGTTTGACCGTCATATCGTGGT
TCCTAATCCAGATGTTGAGGGCCGACGCCAGATCCTGGAGACTCATATGTCAAAGGTGTT
GAAAGCCGACGATGTGGATCTGATGACCATTGCCAGGGGAACACCTGGTTTCTCAGGTGC
AGACCTTGCAAACCTGGTGAATGTGGCTGCTCTCAAGGCTGCCATGGATGGGGCAAAATC
TGTTTCTATGACCGACCTCGAGTTTGCCAAGGACAGGATCATGATGGGCAGCGAACGCAN
ATCAGCAGTGATATCCGACGAAAGCAGGAAAATGACTGCATACCACGAGGGAGGGCATGC
CCTCGTTGCATACACACGGCTGGTGC

Homology of Contig U35_6495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g39260.1	716	protein\|OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
Brachypodium v1_2	Bradi2g14330.1	715
Arabidopsis v10	AT2G26140.1	717	\| Symbols: ftsh4 \| FTSH protease 4 \| chr2:11131939-11135126 REVERSE LENGTH=717