barSeed - Barley Seed Development Database

Probe ABC04362

Source Contig ABC04362

barSeed

Links

Affymetrix Source Sequence (1064 bp)

>ABC04362 1064
CCCGTGAAGCGAAGGACGGGACGGTTGGGGTGGCCATCTGCTGCGGCCCTCACCGCAGCC
TTCGCTTCATCCACCTCCTCCTGACTGCTAGCTCCCTCCATAACATCAACCTCGACTCGC
TCCAGGGAAGGGAGGTGCCGCATCTCCCGAGCAGCGCAGCACTCCACCTACCAGCCGGCC
TCTTCCCACCGCCCCCAAATTCTACCGAGCAGCTCAGCCGGCCAACCCATGGCGCACTGC
CTCGCCGCCGTTTCCTCCTTCTCGCCGTCCGCCGTCCGCCGGCGGCTGTCCAGCCAGGTG
GCTAATGTAGTTTCGAGCCGGAGCTCAGTTTCTTTCCATAGCCGGCAGATGAGCTTTGTA
TCCATCAGTTCAAGACCGAGTTCGCTTCGGTTTAAGATTTGTTGTGCGGCCATGGGAGAG
GCACAGGCCAAGAAAGAGACAGTCGACAAGGTTTGTATGATAGTCAAGAAGCAGCTGGCA
GTCCCTGATGGTACACCTGTCACAGCGGAGTCGAAATTCTCCGAACTTGGTGCCGACTCA
CTAGACACGGTTGAGATTGTGATGGGCCTCGAGGAAGAGTTCAACATCACTGTTGATGAA
ACAAGCGCGCAGGACATTGCAACCGTGCAGGATGCAGCGAACCTTATCGAGAAGCTTGTG
ACAGAGAAGACCGCATAAGCGCCTAGGTTCATTGGACAGCTTTAGAAGGCAAAGGTGTCA
TCTGGATCTGTGGACTTCTGATTTTTCGGTCGCATTTGGGGCGAGAGAAAATAATTTATG
GACAGCTTTGCATTCAGTCTATGTTGTGTGTTCATTGCCATTTGTTCTTTCTTCATCCTC
TCGAGATTTTGTGTTGTTGCTGCGGGTTAATTACCCAAAGGCTTCATAAACAAGCTAGGA
CCATGTCCTAAGTTCGAATTCATATGTGGTGTACTATTGTTATAGAAAAGCTAATGGATC
TATGAAGATTGAAGAGTCGTTGCAGTTTTTATCTTTTTGCATATCTGAGAAGCTATACAG
CTGGGAATATATTATTTCTTTTGTTTCATACCAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK363817	5986	0.0	2077 - 2895	99	818 / 819	CUST_29072_PI390587928 CUST_18144_PI390587928 CUST_36276_PI390587928 CUST_25217_PI390587928	ABC04362 ABC06621 ABC14088 ABC15766 ABC40605
MLOC_37207.1	1120	0.0	358 - 1120	100	763 / 763	None	ABC04362
MLOC_44924.5	1626	5e-67	412 - 550	100	139 / 139	None	ABC04362
MLOC_44924.1	2586	5e-67	1372 - 1510	100	139 / 139	None	ABC04362
MLOC_44924.2	2590	5e-67	1376 - 1514	100	139 / 139	None	ABC04362
MLOC_44924.4	1547	5e-67	334 - 472	100	139 / 139	None	ABC04362
MLOC_44924.3	2009	5e-67	794 - 932	100	139 / 139	None	ABC04362