barSeed - Barley Seed Development Database

Probe CUST_36012_PI390587928

Source Contig U35_31429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36012_PI390587928	Hv_44K_v2	TTGGCGACATTGCCATCTGGCAAAAGCCTACCAATCACATCCACTGCAAGGCTCTCCGCA	397	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353629	2367	2e-24	1367 - 1426	100	60 / 60	plus	ABC04810 ABC04811
MLOC	AK364198	2381	2e-24	1243 - 1302	100	60 / 60	plus	ABC04810 ABC04811
MLOC	MLOC_43452.1	1536	2e-24	848 - 907	100	60 / 60	plus	ABC04811
MLOC	MLOC_43452.2	2006	2e-24	838 - 897	100	60 / 60	plus	ABC04810 ABC04811
JLOC1	JLOC1_28093.1	2386	8e-25	843 - 902	100	60 / 60	plus
Harvest21	ABC04811	2427	3e-25	1264 - 1323	100	60 / 60	plus	ABC04811
Harvest35	U35_31429	512	3e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_1869	2434	3e-25	1265 - 1324	100	60 / 60	plus

Contig Sequence (512 bp)

>U35_31429 512 Hv_44K_v2
TCGAGCACTGTTGGCCTATTGGCACCGGCTGCGGGGTGGCGAGCTGGGGAGCGTATCTGT
TGTCACGCAACATCCTGGCCATGTCGTTCGCTCCGCGGGACTCGCACGAGGCGCAGGTGC
AGTTCGCGCTGGAACGTGGGGTGCCGGCGATGATCGGGGTCCTCGCCTCCAACAGGCTCA
CCTATCCTGCGCGCGCCTTCGACATGGCGCACTGCTCCCGCTGCCTAATCCCCTGGCAGC
TCTACGATGGCCTGTACTTGATTGAGGTGGATCGCATTCTTCGTCCTGGGGGCTACTGGA
TCTTGTCCGGACCACCGATCAACTGGAAGAAGCACTCCAAGGGGTGGCAGAGGACCAGGG
AGGACCTGAACGCAGAGCAGCAAGAAGATCAAGGAGGTTGGCGACATTGCCATCTGGCAA
AAGCCTACCAATCACATCCACTGCAAGGCTCTCCGCANAGTCGCCAAGTCCCCGCCATTC
TGCTCGAAATAAAACCCAGATGCTGCCTGGTA

Homology of Contig U35_31429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48230.2	647	3e-84	protein\|dehydration response related protein, putative, expressed
Brachypodium v1_2	Bradi5g18800.1	644	5e-85
Arabidopsis v10	AT4G00750.1	633	3e-67	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:314405-317507 FORWARD LENGTH=633