barSeed - Barley Seed Development Database

Probe CUST_35853_PI390587928

Source Contig U35_49529

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35853_PI390587928	Hv_44K_v2	CCAGTGGTGTACACCTAATCTTCTTGTTGATCTTTCTTTTCTAGAGTGTTTTTGTTATGA	249	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7963.9	6183	2e-24	3564 - 3623	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.19	4817	2e-24	3104 - 3163	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.15	5250	2e-24	3331 - 3390	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.16	5402	2e-24	3331 - 3390	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.14	5130	2e-24	3331 - 3390	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.24	1724	2e-24	40 - 99	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.23	2248	2e-24	40 - 99	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.2	5086	2e-24	3347 - 3406	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.3	6475	2e-24	3920 - 3979	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.4	5709	2e-24	3347 - 3406	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.21	2764	2e-24	456 - 515	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.6	5512	2e-24	3587 - 3646	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.7	5610	2e-24	3587 - 3646	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.12	5369	2e-24	3386 - 3445	100	60 / 60	minus	ABC06593 ABC51294
MLOC	MLOC_7963.13	5633	2e-24	3386 - 3445	100	60 / 60	minus	ABC06593 ABC51294
JLOC1	JLOC1_5273.38	5845	8e-25	2307 - 2366	100	60 / 60	plus
JLOC1	JLOC1_5273.37	6006	8e-25	1895 - 1954	100	60 / 60	plus
JLOC1	JLOC1_5273.36	5301	8e-25	1763 - 1822	100	60 / 60	plus
JLOC1	JLOC1_5273.35	4975	8e-25	1437 - 1496	100	60 / 60	plus
JLOC1	JLOC1_5273.34	5505	8e-25	1967 - 2026	100	60 / 60	plus
JLOC1	JLOC1_5273.33	5699	8e-25	2161 - 2220	100	60 / 60	plus
JLOC1	JLOC1_5273.31	5493	8e-25	1955 - 2014	100	60 / 60	plus
JLOC1	JLOC1_5273.30	5344	8e-25	1806 - 1865	100	60 / 60	plus
JLOC1	JLOC1_5273.29	5209	8e-25	1671 - 1730	100	60 / 60	plus
JLOC1	JLOC1_5273.28	5175	8e-25	1637 - 1696	100	60 / 60	plus
JLOC1	JLOC1_5273.27	6009	8e-25	2471 - 2530	100	60 / 60	plus
JLOC1	JLOC1_5273.25	5705	8e-25	2167 - 2226	100	60 / 60	plus
JLOC1	JLOC1_5273.23	6018	8e-25	2480 - 2539	100	60 / 60	plus
JLOC1	JLOC1_5273.21	5719	8e-25	2181 - 2240	100	60 / 60	plus
JLOC1	JLOC1_5273.20	5528	8e-25	1990 - 2049	100	60 / 60	plus
JLOC1	JLOC1_5273.19	4955	8e-25	1417 - 1476	100	60 / 60	plus
JLOC1	JLOC1_5273.18	5227	8e-25	1689 - 1748	100	60 / 60	plus
JLOC1	JLOC1_5273.17	5278	8e-25	1740 - 1799	100	60 / 60	plus
JLOC1	JLOC1_5273.16	5184	8e-25	1646 - 1705	100	60 / 60	plus
JLOC1	JLOC1_5273.15	5016	8e-25	1478 - 1537	100	60 / 60	plus
JLOC1	JLOC1_5273.13	5281	8e-25	1743 - 1802	100	60 / 60	plus
JLOC1	JLOC1_5273.12	5420	8e-25	1882 - 1941	100	60 / 60	plus
JLOC1	JLOC1_5273.11	5696	8e-25	2158 - 2217	100	60 / 60	plus
JLOC1	JLOC1_5273.10	5791	8e-25	1680 - 1739	100	60 / 60	plus
JLOC1	JLOC1_5273.9	5978	8e-25	1867 - 1926	100	60 / 60	plus
JLOC1	JLOC1_5273.8	6312	8e-25	2201 - 2260	100	60 / 60	plus
JLOC1	JLOC1_5273.7	5497	8e-25	1959 - 2018	100	60 / 60	plus
JLOC1	JLOC1_5273.6	5223	8e-25	1685 - 1744	100	60 / 60	plus
JLOC1	JLOC1_5273.4	5106	8e-25	1568 - 1627	100	60 / 60	plus
JLOC1	JLOC1_5273.3	5730	8e-25	2192 - 2251	100	60 / 60	plus
Harvest21	ABC51294	356	3e-25	250 - 309	100	60 / 60	plus	ABC51294
Harvest35	U35_49529	356	3e-25	250 - 309	100	60 / 60	plus

Contig Sequence (356 bp)

>U35_49529 356 Hv_44K_v2
AGCGGTGCTCCTTGCATCCAGCTATGTGAAACGGACGACCCAACATGGAATTGTTTTGTT
CGTACCTTTGAAAGCGACGAGGTCTAGACTGGAACAAATACAACAAGGAAGATATTTTGC
TAGAGGAGAAACATGTGAACTTCAGTTCTGTTGAGAGATATGTAAGACGGCTACACATTT
GTTTGGGGTAACTTTGATGTATAGACTTGTGCGATCTGTGTGCATAAGATATTACTTTAT
CCAGTCTATCCAGTGGTGTACACCTAATCTTCTTGTTGATCTTTCTTTTCTAGAGTGTTT
TTGTTATGAACTCTTCCGTGAATTTGGAGTATTTTTTTTCAAAAAAAAAAAAAACC

Homology of Contig U35_49529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None