barSeed - Barley Seed Development Database

Probe CUST_35759_PI390587928

Source Contig U35_1584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35759_PI390587928	Hv_44K_v2	ATTGATCAATCTGATTGGTACTATGTAGCTGACCGATGAGGTGCTTGACCTGTATGCAGG	491	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52219.5	1272	2e-24	484 - 543	100	60 / 60	minus	ABC04282 ABC04283
MLOC	MLOC_52219.3	1001	2e-24	553 - 612	100	60 / 60	minus	ABC04282 ABC04283
MLOC	MLOC_52219.2	1468	2e-24	632 - 691	100	60 / 60	minus	ABC04282 ABC04283
Harvest35	U35_1584	702	3e-25	492 - 551	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_1584 702 Hv_44K_v2
CTGAACTCAGGCATCCTCCACACCTGCAAAACCAAAGGATTTAAGTGAAGAAGCAGGCAG
AGATATCGCCGGAGGCACGCACGCGCGATGGCCACCATCTCTTCTTGCAGCCGCCTGTGC
GGCGGCGGCAGCACCGCCTTCCACCGTCGACGCAGCCGGCCTGCGCGGGCCACCGTCGTC
ACCTGCCGGAGATTCTCGGCCGTCGTCCGCGCGGCCGCCTCTGCCACCGCAGCGGCGCCC
GCGTCCACCGTGCCTCAAACCAAGGAGTGCAAGCTTCCGACGTGGGCGGAGTTCGAGCTG
GGGAAGTCGCCGGTGTACTGGAAGACCACCAACGGTCTTCCTCCAGCCCCGGGAGAGGGC
CTGAAGATATTCTACAACCCAGGGACGACCAAGCTGACACCCAACGAGCAGTTCGGCATC
GCCTTCAACGGTAGCCAGAGCAAACTAAACGCGCTCATGATTCCATCTTCTGTCAAAGTT
CCTTGGGCAAGATTGATCAATCTGATTGGTACTATGTAGCTGACCGATGAGGTGCTTGAC
CTGTATGCAGGGGGCTTTAACCAGCCCATCATGTGCGGCGGCGAGCCGAGGCAGATGACG
CTGCAAGAGAGGGGGAAAGCCTGCCCCCCCATCTACACCATCAGGATACGGGTGCCGCAG
CATGCCATGACACTGGGTTTCTCCTTCACCAACGGAAGCGAA

Homology of Contig U35_1584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g15400.1	268	7e-73
Arabidopsis v10	None