barSeed - Barley Seed Development Database

Probe CUST_35755_PI390587928

Source Contig U35_1586

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35755_PI390587928	Hv_44K_v2	GATTGCTCGATGTGTCCTCTTCTCTTTGTTTATACTTGTATAAAAATGGATTTGTGATGC	1138	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	12.209	7.377	1.003	0.591	0.641	0.390
Raw	226.356	210.230	26.533	26.325	8.445	5.016

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52219.1	1348	2e-24	43 - 102	100	60 / 60	minus	ABC04282 ABC04283
MLOC	MLOC_52219.2	1468	2e-24	43 - 102	100	60 / 60	minus	ABC04282 ABC04283
MLOC	AK248369.1	1057	3e-22	971 - 1029	98	59 / 60	plus	ABC04282 ABC04283
JLOC1	JLOC1_33434.1	1588	8e-25	1180 - 1239	100	60 / 60	plus
Harvest21	ABC04282	1133	3e-25	1027 - 1086	100	60 / 60	plus	ABC04282
Harvest35	U35_1586	1245	3e-25	1139 - 1198	100	60 / 60	plus

Contig Sequence (1245 bp)

>U35_1586 1245 Hv_44K_v2
ATAGCTAAGCCCCCAAAAAATCAAGCGGGCCATCTCTTCTCAGTTGCCCAACGATCATCT
TCCGGCAGCATCATCGTCATCCGCGCAGTCGTCGCCACCTCCCCACCACACACGCGCGCT
CTCGCCTATCCACGCTTATATATGGCGACTCCTGCAAGCGCGAGAAGCTAGCTGATCTCT
GAACTCAGGCATCCTCCACACCTGCAAAACCAAAGGATTTAAGTGAAGAAGCAGGCAGAG
ATATCGCCGGAGGCACGCACGCGCGATGGCCACCATCTCTTCTTGCAGCCGCCTGTGCGG
CGGCGGCAGCACCGCCTTCCACCGTCGACGCAGCCGGCCTGCGCGGGCCACCGTCGTCAC
CTGCCGGAGATTCTCGGCCGTCGTCCGCGCGGCCGCCTCTGCCACCGCAGCGGCGCCCGC
GTCCACCGTGCCTCAAACCAAGGAGTGCAAGCTTCCGACGTGGGCGGAGTTCGAGCTGGG
GAAGTCGCCGGTGTACTGGAAGACCACCAACGGTCTTCCTCCAGCCCCGGGAGAGGGCCT
GAAGATATTCTACAACCCAGGGACGACCAAGCTGACACCCAACGAGCAGTTCGGCATCGC
CTTCAACGGGGGCTTTAACCAGCCCATCATGTGCGGCGGCGAGCCGAGGCAGATGACGCT
GCAAGAGAGGGGGAAAGCCTGCCCCCCCATCTACACCATCAGGATACGGGTGCCGCAGCA
TGCCATGACACTGGTTTTCTCCTTCACCAACGGAAGCGAATGGGACGGGGCTTACACCCT
CAAATTCAAGGTCCCCAAACCATGGCTCAACAAGCCTCTGAGCTTCTTCAACGAGGGGCT
GGCTGACGAGCTCAACATGGAGGGCGCCTGCGACAGGGCCATCTTTCCGGATGAAAACAT
CGTCATCACGAGCTGCGATATCGGCGGCTTCTACGAGGAGGGAGGAGACCGGTGCAAGCT
GGACATCGTGACCGGGTGCATGGACCGGACCTCGCACATGTTCGACCCACTGGCCACCAT
CGACGACGGCTCCTGCCCGCTGGACTCTGATTCGGAGGAGTGACCGGACCAGCGCCAAGA
TGACATGAGCAGCAGCTTCGCAATATGTACTTACTATAAAACAAAGAGGGGGAGCCACGA
TTGCTCGATGTGTCCTCTTCTCTTTGTTTATACTTGTATAAAAATGGATTTGTGATGCAA
TTAAAGGAAGAAGGATAGTACAATGCGCACTAAAAAAAAAAAAAA

Homology of Contig U35_1586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38950.1	272	5e-144	protein\|chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed
Brachypodium v1_2	Bradi1g15400.1	268	2e-157
Arabidopsis v10	AT3G15840.1	268	2e-98	\| Symbols: PIFI \| post-illumination chlorophyll fluorescence increase \| chr3:5356782-5358418 REVERSE LENGTH=268