barSeed - Barley Seed Development Database

Probe CUST_35660_PI390587928

Source Contig U35_14917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35660_PI390587928	Hv_44K_v2	GACAGTGTATGTGTGTGTGGGTCTGGTTCTACATGTTTTACTTAAAAGTGAGATTTTATT	913	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78975.2	1130	2e-24	987 - 1046	100	60 / 60	plus	ABC02536 ABC02537
MLOC	MLOC_78975.1	1191	2e-24	1088 - 1147	100	60 / 60	plus	ABC02536
JLOC1	JLOC1_52637.2	1138	8e-25	763 - 822	100	60 / 60	plus
JLOC1	JLOC1_52637.1	1406	8e-25	788 - 847	100	60 / 60	plus
Harvest21	ABC02536	1071	3e-25	914 - 973	100	60 / 60	plus	ABC02536
Harvest35	U35_14917	1071	3e-25	914 - 973	100	60 / 60	plus

Contig Sequence (1071 bp)

>U35_14917 1071 Hv_44K_v2
CTCCCCTCCCCACAACCCGCAACACAAACCCTAACCCTCCCATCTGACCCATGTACCCTC
TCCCCAATTGGGCCGCCGCCGCCCATCTACGGCGGCTAATCCCACCTCCTCGCCTTCATT
GATGACCACCTGCTCCCACGCGCCAGCTCCTTCCCCTCATCGCCTCGCTCCTCGCCTTCC
CCGCCGACCACCCGCTCCGCGACCACCTCGTCGCCACCGCCGCCTCTGGCCTCGCCTTCG
TGTTCTCCGTGCCGGTCTCCGACCACCTACAAGGTAGAGTCGTACCTCTCCCTATCTCCC
ATGGTGTCAGATCAAGCCGACGAGGTCAGCCCGCGGCCAGATCCGCCATGGCCACATCGG
GCCTGCCGGATCCGTGTCGTCGTCGAGCTGGATCCTCCTCGGAGGCCATGCGAGGACGAT
GGTCGTTGACGACGGCGTCGGCAGGTGCGTCGAGGTCCCTCCTCCATCTTCCTCCCCCTC
CCCTCCCCTCCACCGATCTGCACACCCCATCCACCGTCCTCGGATCCCCTCCAGCAGCCC
TCCCCCTCTTTCAACTCTGAATCCGCCGGAGCCCAGCCGACGCCCGCCATGAGCACCTCC
GAGTACGACTACCTCTTGAAGCTGCTCCTCATCGGCGACTCCTCCATCGGCAAGTCGTGC
CTCCTCCTCCGCTTCGCCGACAATTCGTACGGCGGCAACTACATCAACACCACCGGCGTT
GATTTCAAAATCCGGACCGTCGAGCTCGACGGCAAGTCGGTGAAGCTGCAGATTGTGAGT
TCCAGTTCACAGGAACTTTGCTAGTGCCAGTTCATTCGTAGTTATATGTGTGCATGGTCT
AGAAATGTTCCCGTTATTAGCTCGAGAACATGTGATGCCGGCCATATTGTAGGTTCTAAA
TATGTGTGAGTCTGACAGTGTATGTGTGTGTGGGTCTGGTTCTACATGTTTTACTTAAAA
GTGAGATTTTATTTTTCTTCATCTTTTAGGGGAGAAACTTTTGATCTGTTCAACGACTCT
CAAGATAGTATAAATAACATCAGAAATAAAAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None