barSeed - Barley Seed Development Database

Probe CUST_35659_PI390587928

Source Contig U35_14918

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35659_PI390587928	Hv_44K_v2	TGTCGTCGGTCGATTCGAAATGTACTACTCCACTATTAATAATTCTGACATGATTTCACT	1293	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73233.1	1356	6e-24	1 - 59	100	59 / 59	minus	ABC02528 ABC02532 ABC02535 ABC02539 ABC47157
JLOC1	JLOC1_48746.1	1600	8e-25	1302 - 1361	100	60 / 60	plus
Harvest21	ABC02532	1357	3e-25	1281 - 1340	100	60 / 60	plus	ABC02532
Harvest35	U35_14918	1373	3e-25	1294 - 1353	100	60 / 60	plus

Contig Sequence (1373 bp)

>U35_14918 1373 Hv_44K_v2
GAAGTAGCTCATCGCTCGGTCGCTGGCTCACACTCTCACCACCACGTACGTAACAGCAGG
CAGCAGCTAGGCTCCGGAGAGGCAGAAGCAAGCAGAGAGATGGGGTCCATCGCCGCCGGC
GCCGACGAGGATGCGTGCATGTACGCTCTCCAGCTCGTCTCGTCGTCGATCCTCCCAATG
ACGCTGAAGAACGCCATCGAGCTGGGACTCCTCGAGACCCTGATGTCTGCCGGCGGCAAG
TTCTTGACTCCCGCCGAGGTGGCTGCCAAGCTCCCGTCCACGGCGAACCCGGAAGCGCCG
GACATGGTGGACCGCATGCTCCGGCTGCTGGCCTCGTACAAGGTGGTGTCGTGCAGGACG
GAGGAGAGCAAGGACGGCCGCCTCTCCCGGCGGTACGGCGCCGCGCCCGTGTGCAAGTAC
CTCACCCCCAACGAGGACGGCGTCTCCATGTCGGCGCTGGCGCTCATGAACCAGGACAAG
GTCCTCATGGAGAGCTGGTACTATCTCAAGGATGCGGTCCTAGACGGTGGCATCCCGTTT
AACAAGGCGTACGGGATGTCGGCGTTCGAGTACCACGGCACGGACCCACGCTTCAACCGT
GTCTTCAACGAAGGGATGAAGAACCACTCCATCATCATCACCAAGAAGCTCCTCGAGTCC
TACAAGGGCTTCGAGGGCCTCGGCACCCTTGTCGACGTGGGCGGCGGCGTCGGCGCCACC
GTTGGTGCCATCATCGCGCGCTACCCCGCCGTCAAAGGCATCAACTTCGACCTCCCCCAC
GTCATCTCCGAGGCGCCGGCGTTCCCAGGTGTGACCCACATCGGCGGCGACATGTTCCAG
AAGGTGCCCTCGGGCGATGCCATCCTCATGAAGTGGATCCTCCACGACTGGAGCGACGAG
CACTGCGCGACGCTGCTCAAGAACTGCTATGACGCCTTGCCGGCGCACGGCAAGGTGGTG
CTCGTGGAGTGCATCCTGCCGGTGAATCCAGAAGCCACGCCTGAGGTGCAGGGTGTGTTC
CATGTGGACATGATCATGCTCGCGCACAACCCGGGTGGCAGGGAGAGGTACGAGAGGGAG
TTCGAGGCCCTGGCCAAGGGCGCCGGGTTCGCCGCCATGAAGACCACTTACATCTACGCC
AACGCATGGGCCATCGAGTTCACCAAGTAGATGATCCATGCATGACAACGTCCACCCATC
TCATGCTCTGCATCCACCTGCATGCATGTGTACTTTCTTTTGGTTTTACCTTAATTTTGC
CATTCTCTAAATCGTTCTAAATTCCAATGGTTGTGTCGTCGGTCGATTCGAAATGTACTA
CTCCACTATTAATAATTCTGACATGATTTCACTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06100.1	369	0.0	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g16530.1	361	0.0
Arabidopsis v10	AT5G54160.1	363	1e-150	\| Symbols: ATOMT1, OMT1 \| O-methyltransferase 1 \| chr5:21982075-21984167 FORWARD LENGTH=363