barSeed - Barley Seed Development Database

Probe CUST_35497_PI390587928

Source Contig U35_14180

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35497_PI390587928	Hv_44K_v2	ACTCGCTGGATTCGGTGTTTTCCTAATTTCCTTGGTTGGGTTGCTTCTTGGTTCAAAAAA	745	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.405	1.449	1.060	0.978	0.659	0.584
Raw	20331.033	31213.167	21289.100	28832.533	7262.690	6971.717

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19561.2	1004	9e-22	51 - 105	100	55 / 55	minus	ABC01321 ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
JLOC1	JLOC1_13557.1	1020	5e-22	87 - 141	100	55 / 55	minus
Harvest21	ABC01323	816	3e-25	746 - 805	100	60 / 60	plus	ABC01323
Harvest21	ABC01336	848	2e-22	726 - 780	100	55 / 55	plus	ABC01336
Harvest35	U35_14180	873	3e-25	746 - 805	100	60 / 60	plus

Contig Sequence (873 bp)

>U35_14180 873 Hv_44K_v2
GTCACCCACTGACCCCCCACGCCACGCCATCGTCGCCCCATCAACGCAGCTCGCATAACA
TTTGCATCGTCCCCTCCCTCCGTTTTGCCCCATGGCGGACCAGCTCAGCGAGGAGCAGAT
TGGCGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGACGGCGACGGTAGCATCACCAC
CAAGGAGCTTGGAACCGTGATGCGCTCCCTTGGCCAGAACCCTACCGAGGCGGAGCTGCA
GGACATGATCAACGAGGTGGATGCGGACGGCAACGGCACCATTGACTTCCCAGAGTTCCT
GAACCTGATGGCCCGCAAGATGAAGGACACCGACTCGGAGGAGGAGCTCAAGGAGGCGTT
CCGTGTCTTTGACAAGGACCAGAACGGCTTCATCTCCGCGGCGGAGCTCCGCCAGGTGAT
GACCAACCTCGGGGAGAAGCTGTCGGAGGAGGAGGTGGAGGAGATGGTCCGGGAGGCGGA
CGTGGACGGCGACGGCCAGATCAACTACGACGAGTTCGTCAAGGTCATGATGGCCAAGTG
AGGAACAACCACCACCCTCTGAAATAACCCCTTTCTATTTTCCGCCGAATAACGAGCCGT
CTGGCACTCCTACTTCATAACAATTTCTACTTTATTACCGTGCGCGCTGCTGGTACTGAC
ACTTGTTGGCTAGGTGTAGTCACTGAGGGGAGAAGGGCCAGATATTTTTTTTTTCCTTCT
TGTCTTGGCCACGGACTTCTCCTGTACTCGCTGGATTCGGTGTTTTCCTAATTTCCTTGG
TTGGGTTGCTTCTTGGTTCAAAAAAAAAAAAAAAATCGGTTTGTTGTTGATTGAAAGTTA
CACTGATTTTGCCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17190.1	150	2e-81	protein\|OsCam3 - Calmodulin, expressed
Brachypodium v1_2	Bradi2g52940.1	184	9e-83
Arabidopsis v10	AT5G21274.1	149	4e-81	\| Symbols: CAM6, ACAM-6 \| calmodulin 6 \| chr5:7214740-7215950 REVERSE LENGTH=149