barSeed - Barley Seed Development Database

Probe CUST_35489_PI390587928

Source Contig U35_14188

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35489_PI390587928	Hv_44K_v2	AACAATTTCTACTTTATTACCGTGCGCGCTGCTGGTACTGACACTTGTTGGCTAGGTGTA	598	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372146	811	2e-24	638 - 697	100	60 / 60	plus	ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
MLOC	MLOC_19561.2	1004	2e-24	173 - 232	100	60 / 60	minus	ABC01321 ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
JLOC1	JLOC1_13557.1	1020	8e-25	209 - 268	100	60 / 60	minus
Harvest21	ABC01336	848	3e-25	599 - 658	100	60 / 60	plus	ABC01336
Harvest21	ABC01323	816	3e-25	619 - 678	100	60 / 60	plus	ABC01323
Harvest35	U35_14188	664	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_14180	873	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_14188 664 Hv_44K_v2
GCCACGCCATCGCCGCCCCATCAACGCAGCTCGCATAACATTTGCATCGTCCCCTCCCTC
CGTTTTGCCCCATGGCGGACCAGCTCAGCGAGGAGCAGATTGGCGAGTTCAAGGAGGCCT
TCAGCCTCTTCGACAAGGACGGCGACGGTAGCATCACCACCAAGGAGCTTGGAACCGTGA
TGCGCTCCCTTGGCCAGAACCCTACTGAGGCGGAGCTGCAGGACATGATCAACGAGGTGG
ACGCGGACGGCAACGGCACCATCGACTTTCCAGAGTTCCTGAACCTGATGGCCCGCAAGA
TGAAGGACACCGACTCTGAGGAGGAGCTCAAGGAGGCGTTCCGCGTGTTCGACAAGGACC
AGAACGGCTTCATCTCCGCGGCGGAGCTCCGCCAAGTGATGACCAACCTCGGGGAGAAGC
TGTCGGAGGAGGAGGTGGAGGAGATGGTCCGGGAGGCGGACGTGGACGGCGACGGCCAGA
TCAACTACGACGAGTTCGTCAAGGTCATGATGGCCAAGTGAGGAACAACCACCACCCTCT
GAAATAACCCCTTTCTATTTTCCGCCCAATAACGAGCCGTCTGGCACTCCTACTTCATAA
CAATTTCTACTTTATTACCGTGCGCGCTGCTGGTACTGACACTTGTTGGCTAGGTGTAGT
CACT

Homology of Contig U35_14188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17190.1	150	2e-82	protein\|OsCam3 - Calmodulin, expressed
Brachypodium v1_2	Bradi2g52940.1	184	7e-84
Arabidopsis v10	AT5G21274.1	149	4e-82	\| Symbols: CAM6, ACAM-6 \| calmodulin 6 \| chr5:7214740-7215950 REVERSE LENGTH=149