barSeed - Barley Seed Development Database

Probe CUST_35486_PI390587928

Source Contig U35_14189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35486_PI390587928	Hv_44K_v2	TTATCTCTGTGTAGCGGTGTAGTCGTGTGGAGCAACATTGGATTACCTGGTTTCTTTTGG	685	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368252	855	2e-24	687 - 746	100	60 / 60	plus	ABC01321 ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340 ABC47049
MLOC	MLOC_36991.2	1148	2e-24	1082 - 1141	100	60 / 60	plus	ABC01321 ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340 ABC47049
MLOC	MLOC_36991.1	2209	2e-24	1926 - 1985	100	60 / 60	plus	ABC01321 ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340 ABC47049
JLOC1	JLOC1_23891.3	1394	8e-25	1151 - 1210	100	60 / 60	plus
JLOC1	JLOC1_23891.2	1326	8e-25	1083 - 1142	100	60 / 60	plus
JLOC1	JLOC1_23891.1	2223	8e-25	1927 - 1986	100	60 / 60	plus
Harvest21	ABC01340	892	3e-25	172 - 231	100	60 / 60	minus	ABC01340
Harvest21	ABC01328	762	3e-25	674 - 733	100	60 / 60	plus	ABC01328
Harvest35	U35_14189	923	3e-25	686 - 745	100	60 / 60	plus

Contig Sequence (923 bp)

>U35_14189 923 Hv_44K_v2
ATCATTCCCCACCACCGAGCCCGGTTTATTCCCCCCCTTCGCGCAGCCGCCCCCGTGTCT
CGTGCGCACCTTCTCGAAGCTTCCTCCCCCCATGGCGGACCAGCTCACCGACGAGCAGAT
CGCCGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGATGGCGACGGTTGCATCACCAC
CAAGGAGCTCGGAACCGTGATGCGATCCCTTGGGCAGAACCCCACGGAGGCGGAGCTGCA
GGACATGATCAACGAGGTTGACGCGGACGGCAACGGCACCATCGACTTCCCAGAGTTCCT
GAACCTGATGGCGAGGAAGATGAAGGACACGGACTCGGAGGAGGAGCTCAAGGAGGCCTT
CCGCGTGTTCGACAAGGACCAGAACGGCTTCATCTCGGCTGCAGAGCTGCGCCATGTGAT
GACCAACCTCGGGGAGAAGCTGACGGACGAGGAGGTGGACGAGATGATCCGGGAGGCGGA
CGTGGACGGCGACGGCCAGATCAACTACGAGGAGTTCGTCAAGGTCATGATGGCCAAGTG
AGGGGGGCGGGGCGGGCCCTCCCACGGAAAATAAGCTTTAGTTTGCTCTCAAGTGGATTG
GAAATTTGGAAATGCCAGACAGACTCGAAAGTTGTATTTTGTGCTGTGTGATCGTTTTTT
AAGCACTGTTGGGTAGCTGGTGGGGTTATCTCTGTGTAGCGGTGTAGTCGTGTGGAGCAA
CATTGGATTACCTGGTTTCTTTTGGTTTAAAAAAAAAAAAAAAAATCCTGCGCCTGTTTG
GTCTCTGTCTTGTCATGGGATTTAGGGTCTCTGCACCAGGTTGTGCGGGATGCTTGCTTT
ATTTGAATGGGGGCGTTTGACAAAAAAAAAAAAAATTTTCGCTGAACTTCTCTGTGCTCG
CGCATTGTTCCTAACAAAAGTTC

Homology of Contig U35_14189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48780.1	150	2e-100	protein\|OsCam1-2 - Calmodulin, expressed
Brachypodium v1_2	Bradi2g21460.1	150	3e-101
Arabidopsis v10	AT3G43810.1	149	2e-100	\| Symbols: CAM7 \| calmodulin 7 \| chr3:15664619-15666355 REVERSE LENGTH=149