barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_35459_PI390587928Hv_44K_v2CCCCTTCCGCCTCGTCAGCGCCACCGCCCCTGACCCACAGAATGGGAGCCGGGGCAAGGT321GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_55029.430842e-23746 - 80310058 / 58plus ABC01736 ABC01737 ABC42721
MLOCMLOC_55029.228072e-23902 - 95910058 / 58plus ABC01736 ABC01737
MLOCMLOC_55029.138162e-231043 - 110010058 / 58plus ABC01736 ABC01737 ABC42721
JLOC1JLOC1_35465.134981e-23645 - 70210058 / 58plus
Harvest21ABC0173730974e-24309 - 36610058 / 58plusABC01737
Harvest35U35_141974413e-25322 - 38110060 / 60plus
Harvest35U35_1419531134e-24323 - 38010058 / 58plus



Contig Sequence (441 bp)

>U35_14197 441 Hv_44K_v2
TCGAGCACTGTTGGCCACACCCTACCACCACCACTGCCCTCCTTGTGCCAAGTGCATCAG
CAAGGGGACAGGCACCCACCGGTTGTGTTCCTCGTGCTCTGCTCTGCCCTGCCTCCGCTG
CAGAACCAGAGAGCAGAGGAGAGGAGAGATGCTGCTGCACGGGCTGGTGGACCGGCTGAC
GGGGAAGAACAAGGAGGCGTGGAAGGAGGGCAAGATCCGGGGCACGGCGGTGCTGGTCAA
GAGCGACGTGCTCGACCTCGGCGACTTCCACGCCTCCCTCCTCGACGGCGTCCACAAGAT
CCTCGGCAAGGACGACGGCGTCCCCTTCCGCCTCGTCAGCGCCACCGCCCCTGACCCACA
GAATGGGAGCCGGGGCAAGGTGGGGAAGCCGGCGCACCTGGAGGAGATGGTGGTGACGAT
GAAGTCGACGGCGGCGGGGGA



Homology of Contig U35_14197 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None