barSeed - Barley Seed Development Database

Probe CUST_35201_PI390587928

Source Contig U35_13954

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35201_PI390587928	Hv_44K_v2	ATCTGGATGGTTCTAGATGTTTGTTCTAGATTAGATTGGTGTCCCTGTGATGTGAAAAAA	792	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65728.1	1346	3e-22	397 - 452	100	56 / 56	minus	ABC00119
MLOC	MLOC_65728.3	883	3e-22	28 - 83	100	56 / 56	minus	ABC00016 ABC00119 ABC00154
JLOC1	JLOC1_43268.1	933	1e-22	723 - 778	100	56 / 56	plus
Harvest21	ABC00706	941	5e-23	793 - 848	100	56 / 56	plus
Harvest35	U35_13954	860	3e-25	793 - 852	100	60 / 60	plus

Contig Sequence (860 bp)

>U35_13954 860 Hv_44K_v2
GAAACGCCAACCGTTCTCCACCTTCTCTCAGATGGCCTCTCAGATCCCGGCCGTCTCTCC
GGCGACCACATCACCAGCCCGCTCCCTCTCACTCTCCACCGCGAATCCGGAGATGGACAT
TTCCGGCAACAGCGGGAGGGGCAAGGAGAAGCCCGCGGTCAGAGCGAAGCCCGTGACCAA
GTCGTCTAAGTCCGGCCTGGTGTTCCCCGTCGGCCGCATCGCCAGGTACCTCAAGGCCGG
CAAGTACGCGGAGCGCATCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTCATAGAGTA
CCTCGCCGCCGAGGTCCTTGAGATCTCCGGCAACACGGCGTTGGACAACAAGAGGACCCG
GATCACGCCGCGCCACATCCAGCTGGCGATGCGCAACGACCACGAGATTGGCAAGCTGCT
GGAGGGCGTCCTCATCTCCGGCGGCGGGGTGCCGCCCGACTTCGACGCCATGCTCCTCTA
CAACGAGGCCGAGGCCAAGCCCAAGCGCAAGGCCAAGCGCAAGGCCTAGATTAGGTATTA
GTATCCCATCTCTGGCGGCGGGGTGCTGCCCAGCATCCACACGGCGCCCCTCCCCAACAA
GGCCAAGGGGTCTGCCTCCCAGGAGTTTTAGATTAACTTAGTGTCCCTGTGATGTGATGT
GGATGTTTTGGTTTGCTGTGACATCGATGATGGTAGTGGATCTGGTTGGTTCTAGATGTT
AGATTGTAGATTAGATTGGTGTCCCTGTGATGTGAATCTTTTGGTTTGCAGTGACATCGA
TGTTGGTGGTGGATCTGGATGGTTCTAGATGTTTGTTCTAGATTAGATTGGTGTCCCTGT
GATGTGAAAAAAAAAAAAAA

Homology of Contig U35_13954 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None