barSeed - Barley Seed Development Database

Probe CUST_34958_PI390587928

Source Contig U35_24768

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34958_PI390587928	Hv_44K_v2	CATTGTACTTCATGATCCCTTTCATAAATGCTGATATGATTTGCTGCACTCTATTTGGCG	860	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9250.1	1486	2e-24	310 - 369	100	60 / 60	plus	ABC01285 ABC01302
MLOC	MLOC_9250.2	1258	2e-24	310 - 369	100	60 / 60	plus	ABC01285 ABC01302
JLOC1	JLOC1_6056.4	1224	8e-25	309 - 368	100	60 / 60	plus
JLOC1	JLOC1_6056.3	1253	8e-25	309 - 368	100	60 / 60	plus
JLOC1	JLOC1_6056.2	1488	8e-25	310 - 369	100	60 / 60	plus
JLOC1	JLOC1_6056.1	1260	8e-25	310 - 369	100	60 / 60	plus
Harvest21	ABC01288	923	3e-25	861 - 920	100	60 / 60	plus
Harvest35	U35_24768	923	3e-25	861 - 920	100	60 / 60	plus

Contig Sequence (923 bp)

>U35_24768 923 Hv_44K_v2
GGACCGGCGAGGTCTACCGGGGCTCCATGATTGAGTGCGAGGACAACTGGAACTGCCAGA
TCGAGAACATCACATTCACAGCAAAGGTACCAATCCCTCTCTTCATCTCCTCCTCCCCCT
CATCTCCATCTCGTGGATGCCTAGCAAGGTGTCGCAGCTGGAGCACGTCTTCATCATGGG
CAGCAGGGTCCGGTTCATGATCATCTCCGACATGCTCAAGAACGCGCCCATGGTCAAGCT
CCTAGAGGCCAGGATAAGGGGCAAGGGGTCGGCCATCGGTGTAGGGCGCGGCCGCGCTCT
CGCCATGCGTGCCATGGTAAGCAGCTTTCTCAGCGATTAATTTACACTTTGCAGTTGACC
CCATACAGCACCCAAACATGAATTACGAGGGACTGATATCTGCAATTAATTGTCTTGGGG
TTCCTGTGACACATACTGTGTTTTGGACAGATAGTTGGCCAAATTGTAGCATGTTCATGC
CCATGCAACCTGCTACTAGGGGTTGGTGTTCTTAGTTTTCTACTGGTAATAGGTGGGTGC
TATTTAAAACGCCAACAACATCAAATCTTCTCCTAGCTACTTGCATTTTTTTCTTTTTGT
CTAGGTGAGTGGACAGTGATACCCTATTAAGTTTTTTGTTTTCTTACATGTGGATTCGTA
CTATGAAAAGACAAAACTGTGAGCCCGTGTTGAACATTATACCCTATGTTTTCATTGTTT
CCTGTCACTTCATCCACGGTTTTTTGTTTGCATGACTTGCACAGCTTCTTTGCGATGGCA
TTTACGTCAACCCTTCATCAACATATTGGTTCAGCTTTCACTTCAACCAAGTAGTAGTAA
TTTGGAGCCTCTTTGTTTAACATTGTACTTCATGATCCCTTTCATAAATGCTGATATGAT
TTGCTGCACTCTATTTGGCGCTA

Homology of Contig U35_24768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None