barSeed - Barley Seed Development Database

Probe CUST_34608_PI390587928

Source Contig U35_192

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34608_PI390587928	Hv_44K_v2	TTGAGGCTGGTAGAATCAATGGTGTCAAGAGGTTCTTTTATGCTTCGAGTGCTTGCATCT	449	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56703.1	1455	2e-24	935 - 994	100	60 / 60	minus	ABC01926 ABC01927 ABC01929 ABC01931
MLOC	MLOC_56703.2	1461	7e-23	469 - 528	98	59 / 60	plus	ABC01926 ABC01927 ABC01929 ABC01931
JLOC1	JLOC1_36698.1	1581	8e-25	467 - 526	100	60 / 60	plus
Harvest21	ABC01929	1229	3e-25	545 - 604	100	60 / 60	plus	ABC01929
Harvest21	ABC01931	1481	1e-23	454 - 513	98	59 / 60	plus	ABC01931
Harvest35	U35_192	1455	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (1455 bp)

>U35_192 1455 Hv_44K_v2
ATGCTTTCCTCTCCGGTACCCAGAATATTCTGGGGGAGAAAACGGAAAAAACAGTCCTCC
AGCAGCTCCCCGATTCCCTCACAGAATGGCGCTCAACGAGAAGTACACGTACGCCGAGTT
GGAGAAGGAGCCGTATTGGCCATTCGAGAAGCTGCGGATCTCGATTACAGGAGCTGGCGG
CTTCATAGCCTCCCACATTGCAAAGCGCCTCAAGGGCGAGGGGCACTACATCATCGCCTC
TGACTGGAAGAAGAACGAACACATGGAAGAGGATATGTTCTGCCATGAGTTTCACCTTGC
TGATCTGAGGGTCATGGACAACTGCCTCAAGGTAACCACTGGGGTTGACCATGTTTTCAA
TCTGGCAGCTGATATGGGAGGGATGGGCTTCATCCAGTCCAACCATTCTGTCATCATGTA
CAACAACACTATGATCAGCTTTAACATGCTTGAGGCTGGTAGAATCAATGGTGTCAAGAG
GTTCTTTTATGCTTCGAGTGCTTGCATCTACCCTGAATTTAAGCAGCTGGAAACTGTAGT
TAGCTTGAAGGAGGCGGATGCTTGGCCGGCAGAGCCTCAAGATGCCTATGGCTTGGAGAA
ACTTGCCACTGAGGAATTGTGCAAGCACTACACAAAGGACTTTGACATTGAGTGCCGGGT
TGGTCGCTTTCACAATATATATGGTCCATATGGGACATGGAAGGGTGGAAGGGAGAAGGC
ACCTGCTGCTTTCTGCAGAAAGGCTCTAACCTCCACTGACTGGTTTGAGATGTGGGGAGA
TGGTCTGCAGACTAGATCCTTCACATTTATTGATGAATGTGTGGAGGGTGTCCTCAGGCT
CACAAAGTCTGATTTCCGCGAGCCTGTAAACATCGGGAGTGATGAAATGGTGAGCATGAA
CGAGATGGCTGAGATAGTCCTGGGCTTCGAGAACAAGCAGCTGCCCATCCACCACATCCC
TGGCCCCGAGGGCGTCCGTGGCCGTAACTCTGACAACACACTCATCAAGGAGAAGCTTGG
CTGGGCTCCAACCATGAGGCTGAAGGATGGGCTGAGGATCACGTATTTTTGGATCAAGGA
GCAGCTGGAGAAGGAAAAATCCGAAGGCGCAGACGTGTCGGCATACGGATCATCCAAGGT
CTGCACCACGCAGGCACCGGTCCAGCTTGGCTCCCTCCGCGCCGCAGATGGCAAGGAGTG
AACACTCTCGCCTAGGCAAGGAGATCAGTTGTTTGTCAGTTGTCACACCATTTCTTGATT
CAGTCTGAACTTTCATATACTGCGTGAGATTTGTAGCTTTTTGTGCTGTTGTAAACGGGA
ATAACTGCTTGGCGCAAGAGGATGTTATTAATGTTAAACATTTTATTTGTACATGTAAAA
TCCGGTCAGTTCGTCTTAATGACAACAATGAAATAATATTTTGTTACTTTGTGAGAAAAA
AAAAAAAAAAAAAAA

Homology of Contig U35_192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g37890.1	372	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi4g14950.2	372
Arabidopsis v10	AT5G28840.1	377	\| Symbols: GME \| GDP-D-mannose 3,5-epimerase \| chr5:10862472-10864024 REVERSE LENGTH=377