barSeed - Barley Seed Development Database

Probe CUST_33642_PI390587928

Source Contig U35_48072

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33642_PI390587928	Hv_44K_v2	GTACCATGTACCATATTTATGTCATGCTTACAAGACAAGCGTGCACTACATTATTGAACC	27	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62332.1	1269	7e-23	1168 - 1227	98	59 / 60	plus	ABC01865 ABC01867 ABC12944
MLOC	MLOC_62332.2	1271	7e-23	1170 - 1229	98	59 / 60	plus	ABC01865 ABC12944
MLOC	MLOC_62332.6	866	7e-23	795 - 854	98	59 / 60	plus	None
MLOC	MLOC_62332.3	1266	7e-23	1165 - 1224	98	59 / 60	plus	ABC01865 ABC01867 ABC12944
JLOC1	JLOC1_40789.4	1508	4e-23	1178 - 1237	98	59 / 60	plus
JLOC1	JLOC1_40789.3	1516	4e-23	1186 - 1245	98	59 / 60	plus
Harvest35	U35_48072	332	3e-25	28 - 87	100	60 / 60	minus

Contig Sequence (332 bp)

>U35_48072 332 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAATTAAAAAGGTTCAATAATGTAGTGCACGCTTGTCTTGTAA
GCATGACATAAATATGGTACATGGTACAACCTAAACCATGCTTGCTCCACTCTGTCGCTC
TAGCTAGCTTCCATTGACTCTCCTGCAGTTCCTCCGAACCTCACCGGGCCCACCCGGGAG
CGGCTTAATATTCCCCATGTTGATCATGGCCGCGGCAAAGCTCGTGAAAAAAGCCTTCTC
GTCGCTCGCGAACCGGCCGACGATCTCCGCCGTGGGCGCGCCGGGCGCCGCGAGCAGCTC
CTGGTCGGACTGGAGGAACCCGCGGTTGCCCT

Homology of Contig U35_48072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None