barSeed - Barley Seed Development Database

Probe CUST_33458_PI390587928

Source Contig U35_46938

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33458_PI390587928	Hv_44K_v2	ATGTAAACCAGATTGTTTGGGCATGTAGATCAACTGGAGTTGGGTGCTGTAAACCGTTCG	59	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38387.1	1984	7e-23	1914 - 1973	98	59 / 60	plus	ABC09264 ABC12547 ABC26240 ABC47626
JLOC1	JLOC1_24956.1	2160	4e-23	1914 - 1973	98	59 / 60	plus
Harvest21	ABC47626	389	3e-25	60 - 119	100	60 / 60	minus	ABC47626
Harvest21	ABC12547	653	1e-23	55 - 114	98	59 / 60	minus	ABC12547
Harvest35	U35_46938	389	3e-25	60 - 119	100	60 / 60	minus
Harvest35	U35_5152	653	1e-23	540 - 599	98	59 / 60	plus

Contig Sequence (389 bp)

>U35_46938 389 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAATTCCAGAAAACGGTTTTTTTTGTGTGTGTGTGGGTCCAGC
GAACGGTTTACAGCACCCAACTCCAGTTGATCTACATGCCCAAACAATCTGGTTTACATG
CCTGGCTAACACCAGATAATGATCCTTGAAATGCTACCCTCACACCTGACAATGGAACAT
GAGATGTTCAACATCACAATGGCAGGATCCCGACAGGATCTAAGGTCCCTAATCCATCGA
ATGGCACCGGTCCATGTCCCCTGATGCATCGGCTATCACTTACTGATCCATGGATGGCAT
TCTGCCGGCTAAACCTAACATCAGTTGTCGAATTGAGATGGCTGACGGCGGTTAACCATC
CAGCTAACAGCCTACAGTCACCATGCATT

Homology of Contig U35_46938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None