barSeed - Barley Seed Development Database

Probe CUST_33229_PI390587928

Source Contig U35_7926

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33229_PI390587928	Hv_44K_v2	TAAATATACTGAAGGTAACAGGTTGGGTTGTGCAATATCAAGATAATCTTATTGGCCTTG	1296	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362235	3729	2e-24	2230 - 2289	100	60 / 60	plus	ABC15204 ABC15859 ABC46334
MLOC	MLOC_12436.1	2405	2e-24	1087 - 1146	100	60 / 60	plus	ABC15859
JLOC1	JLOC1_8343.1	2320	8e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_7926	1356	3e-25	1297 - 1356	100	60 / 60	plus

Contig Sequence (1356 bp)

>U35_7926 1356 Hv_44K_v2
AGTGTCAGATCTCTCCACCACCCCCCGCCCTCATTCCTTCCTCCGGTTAAAACACACGCC
GCACCCGACCACGCCTTCGTCGCGATCTCCGTCCCCCCACCCGCACGCCCACCGCTCCCA
CCGTTCCGCCGAACCCCTCCCGCTCCCGCTCCTGCCCGCCTCGATTCGGAGGAGCGCAGG
GCGGCGGCGCGCGGGCGGCCGGCCGGCGCCAGCGGGTCATGGAGGATCTGGGCATCGAGG
CCAAGGAGGCGGCGGTGCGCGAGGTGGCCAAGCTGCTCCCGTCCCAGGACCTCCTCTCCT
CCATCGCCTCCATTAAGGCCGACTACCTCTCGCGGCAGCAGACAAATGATACCCAACTCA
GTTCAATGGTGGCAGAACAGGTCGAGCAAGCTCATGCTGGCATCAGCGCTCTTGCGTTAT
CGCAGCAAACAATAAACGGTCTACGTGAGAACTTCATAGATATAGACAAGTTGTGTCAGG
AGTGTCAAACATTAATCGAGAATCACGACAGGATCAAGCTCCTTAGCAATGCAAGAAACA
ACCTGAACACAACTTTAAAGGATGTTGGAGGTATGATGTCCATTTCTGTTGAAGCAGCTG
CAGCACGTGACTCCTTGAGCGATGACAAAGAATTGATTCACACTTACGAGAGATTAACAG
CTCTTGATGGAAAGAGGCGTTTTGCTTTAGCTACTGCTGGATCTCATAAGGAAGAAGTTG
GCCGATTGAGAGAATACTTTGAAGATGTTGATCGATCGTGGGAAACATTTGAAAAGACAT
TATGGGAACATATCGCAAACTTCTTTAGGCTTTCAAAAGAGAGCCCTCAGACGTTGGTCC
GAGCTCTAAGGGTTGTTGAAATGCAAGAGATCATAGACCAACAAGTTGCAGAGGAAGCAG
CTGAGGCTGAGGGTGCAGGCGCTATGGCGACAATAACAAACCAACGTAGAACGACAAAAA
AAGGTGCAGGGGCAGCATCTACCCCAAGAAATAGCACACAAGAGAAATCAAAGACCCAGG
GAAAGGGCTACAAGGATAAATGCTATGAGTGCATAGGGAAGGCTGTTGAGGCTCGCTTCG
ACAAATTGCTCAGTGAGCTTGTTTTCTCAGAAGATATGATGGAAGCTCTGGAGGAAGCTA
AGGCAATTGGAGAAGAGCTTGGCGATATCTATGACTATGTTGCACCATGTTTTCCTCCTA
GATATGAAATTTTCCAGCTCCTGGTAAATCTATATACTGAAAGGTTCATTCATATGCTAA
GACTGCTCAGTGAAAGAGCAAATGATATTCAAAATATAAATATACTGAAGGTAACAGGTT
GGGTTGTGCAATATCAAGATAATCTTATTGGCCTTG

Homology of Contig U35_7926 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51430.1	756	0.0	protein\|SEC6, putative, expressed
Brachypodium v1_2	Bradi3g59230.3	747	0.0
Arabidopsis v10	AT1G71820.2	774	3e-167	\| Symbols: SEC6 \| SEC6 \| chr1:27010022-27016745 FORWARD LENGTH=774