barSeed - Barley Seed Development Database

Probe CUST_3310_PI390587928

Source Contig U35_4131

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3310_PI390587928	Hv_44K_v2	GAATATATGCTCTCTGATCTGAATATTTGCTTGTGGTTGGCATAATATAGCCATTGTTCC	952	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252542.1	1296	2e-24	1027 - 1086	100	60 / 60	plus	ABC08901 ABC08902 ABC10269
MLOC	MLOC_16489.1	1558	2e-24	312 - 371	100	60 / 60	minus	ABC08901 ABC08902 ABC10269
JLOC1	JLOC1_11355.1	1377	8e-25	1126 - 1185	100	60 / 60	plus
Harvest21	ABC08901	1012	3e-25	953 - 1012	100	60 / 60	plus	ABC08901
Harvest35	U35_4131	1012	3e-25	953 - 1012	100	60 / 60	plus

Contig Sequence (1012 bp)

>U35_4131 1012 Hv_44K_v2
ACCAGCTCCGATGTCTGCCCCACCGCCCCCCGCCTCGTCCGATGATGATGCTAAGCCCGT
CGACGAGGAGGGCGTAGAGATCCGCGAGGTATGGGCGACGAACCTCGAGGCGGAGTTCGC
CGTGATCCGTGACGTCGTCGGCGATTACTCGTACATCGCTATGGACACCGAGTTCCCGGG
CATCGTGTGCCGCCCGCTCGGGAGCTTTCGCTCCAATGACGAGTACAACTACGCCACCCT
CAAGGCCAACGTCGACATGCTGAGCCTCATCCAGCTTGGTCTCACTCTCTCCGACGAGAA
CGGCGCACTCCCTGCCAGGGGCACGGGGGGGCGCCCCTGCGCCTGGCAGTTCAACTTTCG
GGGCTTCGATCCGCGCTCAGACCCCGCCAACGCCGACTCCATCGACCTGCTACGCAACAG
TGGGATCGACTTCGACCGCTTCACCACCGAGGGTGCTGACACGGGCCACTTCGCCGAGCT
GCTCATGTCGTCCGGCGTCCTGCTCAACGCTGAGGTCCAGTGGGTCACATTTCACAGCGG
GTATGACTTCGGATACCTGCTCAAGCTGCTAACCGGGCGGAACCTACCTGACACCATGCC
TGGATTCTTTGACCTCATCAGAATCTACTTCCCGGTACTGTACGACATCAAGCATCTCAT
GAAGTACTGCGGCAGCCTCCATGGTGGCTTGAGCAAGCTTGGTGAGCTACTTGGTGTCCA
ACGTGTGGGGATCTGCCACCAGGCTGGGTCAGACTCACTGCTGACCTTGCAGTGCTTCAA
AAAGCTGAAGGAGGTGTATTTCAGAGGATCGACCGAGAATTATGCCGGTGTGTTGTATGG
TCTTATTTCTGATGGTGGGGAGAACAGACCACCAGCAGCTCTGCTCATCGAATGAGTAAT
GGATAGTCAAATAAGACAATGTTATGGTTGAAAAAAAGGAAATATTTCTGTTGAATATAT
GCTCTCTGATCTGAATATTTGCTTGTGGTTGGCATAATATAGCCATTGTTCC

Homology of Contig U35_4131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34170.1	289	1e-156	protein\|CAF1 family ribonuclease containing protein, putative, expressed
Brachypodium v1_2	Bradi3g36950.1	295	1e-165
Arabidopsis v10	AT2G32070.1	275	2e-122	Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr2:13640829-13641656 REVERSE LENGTH=275