barSeed - Barley Seed Development Database

Probe CUST_3309_PI390587928

Source Contig U35_4132

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3309_PI390587928	Hv_44K_v2	TTTCAGAGGATCGACCGAGAATTATGCCGGTGTGTTGTATGGTCTTATTTCTGATGGTGG	872	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252542.1	1296	2e-24	872 - 931	100	60 / 60	plus	ABC08901 ABC08902 ABC10269
MLOC	MLOC_16489.1	1558	2e-24	466 - 525	100	60 / 60	minus	ABC08901 ABC08902 ABC10269
JLOC1	JLOC1_11355.1	1377	8e-25	972 - 1031	100	60 / 60	plus
Harvest21	ABC08902	1055	3e-25	873 - 932	100	60 / 60	plus	ABC08902
Harvest21	ABC08901	1012	3e-25	799 - 858	100	60 / 60	plus	ABC08901
Harvest35	U35_4132	1055	3e-25	873 - 932	100	60 / 60	plus
Harvest35	U35_4131	1012	3e-25	799 - 858	100	60 / 60	plus

Contig Sequence (1055 bp)

>U35_4132 1055 Hv_44K_v2
CGCCTGCGCTGACCTGTGGCCCCCTGCTCCCGCCTCCCTGTCCTCCTGTTATTACTTTCC
CCACCACGCCGATCTGCCGGACTGTTTCGCAAACCCTAACCCTAGCAAGCCCGCTTCACT
CCTCCAACAAGATCTCTCTCCGAATCTATGGATGCACCAGCTCCGATGTCTGCCCCACCG
CCCCCCGCCTCGTCCGATGATGATGCTAAGCCCGTCGACGAGGAGGGCGTAGAGATCCGC
GAGGTATGGGCGACGAACCTCGAGGCGGAGTTCGCCGTGATCCGTGACGTCGTCGGCGAT
TACTCGTACATCGCTATGGACACCGAGTTCCCGGGCATCGTGTGCCGCCCGCTCGGGAGC
TTTCGCTCCAATGACGAGTACAACTACGCCACCCTCAAGGCCAACGTCGACATGCTGAGC
CTCATCCAGCTTGGTCTCACTCTCTCCGACGAGAACGGCGCACTCCCTGCCAGGGGCACG
GGGGGGCGCCCCTGCGCCTGGCAGTTCAACTTTCGGGGCTTCGATCCGCGCTCAGACCCC
GCCAACGCCGACTCCATCGACCTGCTACGCAACAGTGGGATCGACTTCGACCGCTTCACC
ACCGAGGGTGCTGACACGGGCCACTTCGCCGAGCTGCTCATGTCGTCCGGCGTCCTGCTC
AACGCTGAGGTCCAGTGGGTCACATTTCACAGCGGAATCTACTTCCCGGTACTGTACGAC
ATCAAGCATCTCATGAAGTACTGCGGCAGCCTCCATGGTGGCTTGAGCAAGCTTGGTGAG
CTACTTGGTGTCCAACGTGTGGGGATCTGCCACCAGGCTGGGTCAAAATCACTGCTGACC
TTGCAGTGCTTCAAAAAGCTGAAGGAGGTGTATTTCAGAGGATCGACCGAGAATTATGCC
GGTGTGTTGTATGGTCTTATTTCTGATGGTGGGGAGAACAGACCACCAGCAGCTCTGCTC
ATCGAATGAGTAATGGATAGTCAAATAAGACAATGTTATGGTTGAAAAAAAAGGAAATAT
TTCTGTTAATATATGTCTCTGATCTGAAATTTGCT

Homology of Contig U35_4132 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34170.1	289	1e-129	protein\|CAF1 family ribonuclease containing protein, putative, expressed
Brachypodium v1_2	Bradi3g36950.1	295	5e-142
Arabidopsis v10	AT2G32070.1	275	9e-100	Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr2:13640829-13641656 REVERSE LENGTH=275