barSeed - Barley Seed Development Database

Probe CUST_32984_PI390587928

Source Contig U35_16382

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32984_PI390587928	Hv_44K_v2	TCTGAATGACCTTTGCGCTTCGATTATATATTTTTTATATTCAATGGTCGGTCAGGGCAA	1074	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364507	3509	6e-24	3448 - 3506	100	59 / 59	plus	ABC04118 ABC06326 ABC08070
JLOC1	JLOC1_3304.1	1090	3e-24	817 - 875	100	59 / 59	plus
Harvest35	U35_16382	1172	3e-25	1075 - 1134	100	60 / 60	plus

Contig Sequence (1172 bp)

>U35_16382 1172 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGAACACAAGGCAGCATCTCTCTTTCTCTCTCTGTGTCACA
CACGCGAGTCGCCGAGAAGAAAGCCCCAAACTTTCTCCTCTCGATCGATCCATCCGTCCG
TCCGTCCGTCGCCGCCGGAGCTCCTTCCTCCCCGGATTCGCCGCCCCCTCCAGCGATCGA
TCGGATCCCGCCGGCCGGAGGTCCCCCGACCCCCGCCCGATCCACCCCCATGGCGGCCAA
CGCCGGCGCCGGCGCCGGCGGCAGCAAGATCCGCAACGCCAAGCTGGTTCTTCTAGGGGA
CGTCGGCACCGGCAAGTCCAGCCTGGTGCTCCGCTTCGTCAAGGGCCAGTTCGTCGAGTT
CCAGGAATCCACCATCGGCGCCGCCTTCTTCTCGCAAACCCTGGCGGTCAACGACGAGAC
GGTCAAGTTCGAAATCTGGGACACGGCCGGCCAGGAGAGGTACCACAGCCTGGCGCCCAT
GTACTACCGTGGCGCCGCCGCCGCCATCGTCGTCTATGACATCACCAACGCGGCCTCTTT
TACACGTGCAAAGAAATGGGTTCAAGAACTTCAAGCACAAGGGAATCCAAACACAGTAAT
GGCTCTTGCTGGGAACAAGGCTGATATGCTAGAAGCAAGGCAGGTGCCAGTGGAAGAAGC
GACGACTTACGCACAAGAGAATGGGCTCTTCTTCATGGAAACGTCTGCCAAGACAGCCAT
CAACGTGAATGACGTATTCTATGAGATCGCCAAGAGGCTGCTCGCGGGGCAGCAGGCGCA
GAACCCGCAGGCAGGGATGGTGCTCTCGCAGAGACCAGCCGAGAGGATGGTGAGCAGCAC
GTCGTGCTGCTCATCATAGGATGCTTGGCCGTGGAGAGACGGCTGCCATCCACAGAAGGA
AGAAAAAAAATGGATGCTCTGTGGACGATTGCTGCCATCCCAGCTTGCTACACTACAGTC
TAGCCCTTGTTTCTTGTCATATGTTGGTTCTGTAAATGTGAATAGTAGTGGGGTGTTGCT
GCTGCAGATGTTCAGATATGTTGTGGCAGTTGCATTCTGGTGCTTAAATATATTTCTGAA
TGACCTTTGCGCTTCGATTATATATTTTTTATATTCAATGGTCGGTCAGGGCAAAAAAAA
AGAAAGTTTTGGTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16382 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43550.2	204	2e-125	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi4g00987.1	207	1e-129
Arabidopsis v10	AT4G19640.1	200	5e-101	\| Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B \| Ras-related small GTP-binding family protein \| chr4:10687441-10689449 REVERSE LENGTH=200