barSeed - Barley Seed Development Database

Probe ABC06326

Source Contig ABC06326

barSeed

Links

Affymetrix Source Sequence (1121 bp)

>ABC06326 1121
CAGCATCCCTCTCTGTGTCACACACGCGAGTCGCCAAGAAGAAAGTCCCAAACTTTCTCC
GCTCGATCGATCGATCCGTCCGTCCGTCGCCGCCGGAGCTCCTTCCTCCCCGGATTCGCC
GCCCCCTCCAGCGATCGATCGGATCCCGCCGGCCGGAGGTCCCCCGACCCCCGCCCGATC
CACCCCCATGGCGGCCAACGCCGGCGCCGGCGCCGGCGGCAGCAAGATCCGCAACGCCAA
GCTGGTTCTTCTAGGGGACGTCGGCACCGGCAAGTCCAGCCTGGTGCTCCGCTTCGTCAA
GGGCCAGTTCGTCGAGTTCCAGGAATCCACCATCGGCGCCGCCTTCTTCTCGCAAACCCT
GGCGGTCAACGACGAGACGGTCAAGTTCGAAATCTGGGACACGGCCGGCCAGGAGAGGTA
CCACAGCCTGGCGCCCATGTACTACCGTGGCGCCGCCGCCGCCATCGTCGTCTATGACAT
CACCAACGCGGCCTCTTTTACACGTGCAAAGAAATGGGTTCAAGAACTTCAAGCACAAGG
GAATCCAAACACAGTAATGGCTCTTGCTGGGAACAAGGCTGATATGCTAGAAGCAAGGCA
GGTGCCAGTGGAAGAAGCGACGACTTACGCACAAGAGAATGGGCTCTTCTTCATGGAAAC
GTCTGCCAAGACAGCCATCAACGTGAATGACGTATTCTATGAGATCGCCAAGAGGCTGCT
CGCGGGGCAGCAGGCGCAGAACCCGCAGGCAGGGATGGTGCTCTCGCAGAGACCAGCCGA
GAGGATGGTGAGCAGCACGTCGTGCTGCTCATCATAGGATGCTTGGCCGTGGAGAGACGG
CTGCCATCCACAGAAGGAAGAAAAAAAATGGATGCTCTGTGGACGATTGCTGCCATCCCA
GCTTGCTACACTACAGTCTAGCCCTTGTTTCTTGTCATATGTTGGTTCTGTAAATGTGAA
TAGTAGTGGGGTGTTGCTGCTGCAGATGTTCAGATATGTTGTGGCAGTTGCATTCTGGTG
CTTAAATATATTTCTGAATGACCTTTGCGCTTCGATTATATATTTTTTATATTCAAAAAA
AAAAAAAAAAATGGAAAGTTTTGGCAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366997	3284	0.0	2221 - 3284	99	1055 / 1064	CUST_13136_PI390587928 CUST_42289_PI390587928	ABC01883 ABC01885 ABC06326 ABC06921 ABC21171 ABC37654
MLOC_5164.1	826	0.0	1 - 826	100	826 / 826	CUST_42289_PI390587928	ABC06326 ABC06921
MLOC_5164.2	555	0.0	1 - 516	100	516 / 516	CUST_42289_PI390587928	ABC06326 ABC06921
AK364507	3509	2e-160	2664 - 2996	98	325 / 333	CUST_32984_PI390587928	ABC04118 ABC06326 ABC08070
MLOC_74291.3	942	2e-135	101 - 697	82	489 / 600	None	ABC06326 ABC06921
MLOC_74291.2	1092	2e-135	130 - 726	82	489 / 600	CUST_178_PI415269222 CUST_26836_PI390587928	ABC06326 ABC06921
MLOC_74291.1	1332	5e-117	794 - 1327	81	435 / 536	CUST_2460_PI390587928	ABC06326 ABC06921
MLOC_18392.1	1880	2e-67	1 - 172	94	162 / 172	None	ABC06326
MLOC_18392.2	1725	2e-67	1 - 172	94	162 / 172	None	ABC06326
MLOC_9619.1	149	9e-60	1 - 147	95	140 / 147	None	ABC06326