barSeed - Barley Seed Development Database

Probe CUST_32593_PI390587928

Source Contig U35_17565

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32593_PI390587928	Hv_44K_v2	CTGCTCGCCTTTGTCACTTTGTATCTTCTTTCCCTTTCTTAATAAAGATCAGCTACAACC	1334	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.756	0.618	1.345	1.276
Raw	2.950	3.032	3.799	4.240	3.193	4.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4763.2	2994	3e-21	2930 - 2989	97	58 / 60	plus	ABC09600 ABC09601 ABC15584 ABC37733
MLOC	MLOC_4763.1	2951	3e-21	18 - 77	97	58 / 60	minus	ABC09600 ABC09601 ABC15584 ABC37733
JLOC1	JLOC1_3010.2	1901	2e-21	1833 - 1892	97	58 / 60	plus
JLOC1	JLOC1_3010.1	1887	2e-21	1819 - 1878	97	58 / 60	plus
Harvest21	ABC09600	1416	3e-25	1335 - 1394	100	60 / 60	plus	ABC09600
Harvest35	U35_17565	1416	3e-25	1335 - 1394	100	60 / 60	plus
Harvest35	U35_17566	490	6e-22	409 - 468	97	58 / 60	plus

Contig Sequence (1416 bp)

>U35_17565 1416 Hv_44K_v2
GCTTTCAGGTTGCAACAGAAGGAAACCTTGGCTTGGCAGAAGCCTATATTAATGGTTGTT
TCTCCTTTCTTGACAAGAGAGAAGGCCTTCTGAATTTTCTCTTGATTCTCATTGCAAACA
GAGATGCGCGTAGGAGCTCCAGGATTGCTGGAAATAGGGGTCGGTGGACACCCTTGCATG
TAATAGCTCGGTTTGCACATGCTAAATACTTTATGGGCCAAGCCTCAAGGAAGAACACTA
TGACACAAAGTCGTCGAAACATCTCTCAGCACTATGATCTTAGTAACGAATTTTTCTCGC
TTTTTATGGACAAATCGATGACCTACTCTTGTGCAATTTTCAAGAAGGACAATGAAAGCT
TAGAAGCAGCCCAAGAACGTAAACTTAGCCTTCTAATCAAGAAGGCCAAAGTCGAGAGGG
GGCACCATGTTCTTGATATTGGTTTCGGTTGGGGAAGTTTAGCAATACAAGTGGTGAAGC
AAACTGGCTGCAAATACACTGGAGTCACTTTGTCAGAGGAGCAGCTTAAATACGCCGAGG
GAAAAGCAAAAGAAGCTGGCTTAGAGGACCACATAACTTTTCTGTTGTGCGACTACCGTA
AAATACCACCGTGCAAGTATGACGCAATCATAAGCATCTGTATGATTGAACATGTTGGCC
ATGAATACTTGGACGATTTTTTTGCCTGCTGCGAGTCTTACTTGGCTGAAGATGGCATAA
TGGCCTTGCAGTTCATCTCAGTTCCAGACGAACGGTATGAGCAATATAGAAGAAAGCCAG
ACTTCATAAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCATTGTCCCGTGTAATGT
CTGCCATGACCAGATCTTCGAGGTTCAGCGTAGAGCATGTCGAGAATATTGGCCCCCATT
ACTACACAACTCTGATGTGCTGGATGGACAACTACACTGCCAACAGAGATAAAATTTTGG
CCCTGGCTTTGATGAGAAGTTCATCCGTATATGGGAGTACTACCTCATATTCTCTGCGGC
TTGTATGAAGGCACGAGCACTTGGAGATTACCAAGTTGTTTTCTCTCGCCCAGGCAACCG
TCGTCTAGACCAGCCTTTGGCTAAAGGCTAAAGCCAACTTATCCTCCGTTCAGCTGTCGA
ACTATTACTTTTCGATAATTCATATAGGCCGCCTAGCGAATAAACCATATGGTTTGGTGA
TCTACCTTCTTGTTTACCGAAAAAGGCTTTCGCCCCTGTTTTAATCATGTGATATCTAGT
TTTTCGTGGTGTTGTATTGTTATCTATCAATAGACCTTGTATGTGTGTACGCAACGGCCC
TAATGACATGTAACCTGCTCGCCTTTGTCACTTTGTATCTTCTTTCCCTTTCTTAATAAA
GATCAGCTACAACCTTTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29220.1	466	6e-161	protein\|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
Brachypodium v1_2	Bradi5g02490.1	795	3e-153
Arabidopsis v10	AT3G23530.1	867	1e-130	Cyclopropane-fatty-acyl-phospholipid synthase \| chr3:8437472-8442597 FORWARD LENGTH=867