barSeed - Barley Seed Development Database

Probe CUST_32590_PI390587928

Source Contig U35_17567

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32590_PI390587928	Hv_44K_v2	GGGAGTGTCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAAGGAACTGG	2076	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.657	1.478	0.783	0.718	1.130	0.817
Raw	12.767	17.455	7.750	9.828	5.084	2.922

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63588.6	2876	2e-24	2761 - 2820	100	60 / 60	plus	ABC09600 ABC09601 ABC15584
MLOC	MLOC_63588.9	1356	2e-24	1270 - 1329	100	60 / 60	plus	ABC09600 ABC09601 ABC15584
MLOC	MLOC_63588.1	3184	2e-24	3030 - 3089	100	60 / 60	plus	ABC09600 ABC09601 ABC15584
MLOC	MLOC_63588.3	3218	2e-24	3016 - 3075	100	60 / 60	plus	ABC09600 ABC09601 ABC15584
MLOC	MLOC_63588.7	3220	2e-24	3091 - 3150	100	60 / 60	plus	ABC09600 ABC09601 ABC15584
MLOC	MLOC_63588.4	3201	2e-24	3072 - 3131	100	60 / 60	plus	ABC09600 ABC09601 ABC15584
JLOC1	JLOC1_41661.4	3443	8e-25	2995 - 3054	100	60 / 60	plus
JLOC1	JLOC1_41661.3	3354	8e-25	2906 - 2965	100	60 / 60	plus
JLOC1	JLOC1_41661.2	3473	8e-25	3025 - 3084	100	60 / 60	plus
JLOC1	JLOC1_41661.1	3476	8e-25	3028 - 3087	100	60 / 60	plus
Harvest21	ABC09599	540	3e-25	56 - 115	100	60 / 60	minus
Harvest35	U35_17567	2239	3e-25	2077 - 2136	100	60 / 60	plus

Contig Sequence (2239 bp)

>U35_17567 2239 Hv_44K_v2
AAGGTAAAAGNAGAATTGGAGAGCATTGGCTGTCGATTAAAACCAGTTGTCGGGTCAAAT
CTGTTTCAAGTCTTGATGGAGCAGCTGGCTACAGAGTCTTGGAGAATGATGGTTCAGTGG
AAACATACGACAGTGTCATCTTTGGGGTCCATGCATCCAATGCTCTCAAATTATTAGGAG
CTGAAGCATCACATCACGAACGAAGAATTCTAGGTGCCTGTCAGTATGTCCAAAGAGATA
TATACCTCCACTGCGATCAAAATTTGATGCCCCGAAAATCATCAGCATGGAGTGCGTGGA
ATTTCCTTGGGACAACTAGTAGGGGTTTTTCTATTACTTACTGGCTAAACCAAATTCAGA
AATTTGAATCGGGCAGGCCTTTCCTGGTGACACTCAATCCCCCTTGTGTTCCGGATCATG
TACTACTTAAATGGAATACAAGCCTTCCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATC
TTCAGCTTCATCAGATCCAGGGAAAGAGGGGAATATGGTTCTGTGGGGCATATCAAGGTC
ATGGCTTCCATGAAGACGGATTAAAGTCTGGGAAAGCAGCGGCTCAAGGTTTGCTTGGAA
AGAAATGTGAGCTTCTGCTGAACCCAAAGAATATGATTCCATCATGGATTGAGGCTGGGG
CACGCCTTCTAGTTGCAAGATTTTTCAACCAATACATATCCATTGGTAACTTGATATTGG
TCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAATGCTGTGTAAAAT
CTGTCATCCAAGTTCATGACCCCTTGTTTTATTGGAAGGTTGCAATAGAAGGAGGCATGG
GCTTGGCAGAATCCTATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTC
TAAATCTTATCCTGATTCTCATTGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCA
GAAAAGGGTTTTGGTTGTCACCCTTCCATGTAATAGCTCAATTGGCATATGCTAAACACT
TTTTGCGCCAGGCAACAAGGAAGAACACTGCAACACAAACTCGTCGAAACATCTCTGAGC
ACTATGATCTTAGTAACGACTTTTTTTCGCTTTTTCTGGATAAATCGATGACTTACTCCT
GTGCAGTTTTCAAGGAGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTC
TAATCAATAAGGCTAAAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGG
GAAGTTTAGCAATAGAAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTAT
CGGCGGAGCAGCATAAATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCA
TAAATTTTCTGCTGTGCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAA
GCTGTGGTATGATTGAACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTG
AGTCTTACTTGGCTGAAGATGGGATATTGGTCCTCCAGTTCATCTCAGTTCCAGAGGAAC
GGTACGAGCAATACAGAAAAAGGCCAGACTTCATAAAAGAGTACATATTCCCTGGTGGTT
GCCTTCCTTCTTTGGCCCGTATAATGTCTGCCATGACCGCGTCATCAAGGTTCTGCATAG
AGCATGTCGAGAATATTGGGCCCAATTACTACACAACTCTGATGCACTGGAGGGACAACT
TCATGGCCAACAAAGACCAAGTTTTGGCCCTGGGCTTTGATGAAAGGTTCCTCCGTATAT
GGGAGTACTACCTCATATTCTCTGCGGCTGGTTTCAAGTCACGAGCAATTGGAGATTACC
AGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCTAGGCCAGCCTTGATGGCCGGAGACAA
CATATCCTTCTCCGTTCAGCGGCCGAATCGTTACTTGTCAGTACCGTACGAGATTTTAAT
AAGTCAGTCCTGGAATGATTCGCTCATGCCCGAATCCTACTCAGGTGGTTTGGTGATCTA
TCTTGTTGTTTAACCATGCAATGGTTAGTTTTTCGTGGGAGTGTCTTGTTATCCATCAAT
TAACTAGAATTTTGAGAATTGTATGTAAGGAACTGGTTTGTTTGCTTTAATATCTATGAG
GAAGAGTTGATGTCAAAAAAAAAAAAAAAAAATGATCTGATCTATTCGGTGTTTGCCGTT
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g16650.2	795	protein\|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
Brachypodium v1_2	Bradi5g02490.1	795
Arabidopsis v10	AT3G23510.1	867	Cyclopropane-fatty-acyl-phospholipid synthase \| chr3:8428071-8433159 FORWARD LENGTH=867