barSeed - Barley Seed Development Database

Probe CUST_32470_PI390587928

Source Contig U35_4868

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32470_PI390587928	Hv_44K_v2	AATGGCGGTTTCCACACGCATGGCACTCTTGCTCACAGCTTGCTTCCTCGGTTGCTACGT	73	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63550.3	1874	2e-24	1720 - 1779	100	60 / 60	minus	ABC12286 ABC14427
MLOC	MLOC_63550.1	1896	2e-24	1804 - 1863	100	60 / 60	minus	ABC12286 ABC14427
MLOC	MLOC_63550.2	2418	2e-24	2326 - 2385	100	60 / 60	minus	ABC12286 ABC14427
JLOC1	JLOC1_41639.1	1904	8e-25	1751 - 1810	100	60 / 60	minus
JLOC1	JLOC1_41638.1	1707	8e-25	95 - 154	100	60 / 60	plus
Harvest35	U35_4868	596	3e-25	74 - 133	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_4868 596 Hv_44K_v2
TGGTACCGGTCCTTCATTCCTCGAGCACTGTTGGCCTAGGAAGCTCTGTGCCAGTTTGTT
CGAGAGCGGCAAAAATGGCGGTTTCCACACGCATGGCACTCTTGCTCACAGCTTGCTTCC
TCGGTTGCTACGTGTCCGTCCCCTCCTTGGCTGCCTCCGGCGACTTCCTCCAGTGCCTCT
CGTCGAGCATCCCCAGCGAGCGCGTATTGACGCCGAGTTCGCCGTCGTTCACTTCCGTCC
TGGTGTCGTCCATCCGGAACCCCAAGTTCTTCACCCCGACGACTGTGAGGCCGCTCTGCA
TCGTGACGCCCACCAACGCGTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGCCACG
ACGTGCGCCTCCGCGTGCGCAGCGGCGGACACGACTACGAGGGCCTCTCGTACCGGTCCG
AGCGCCCCGAGGTGTTCGCGGTGGTCGACCTCGCCAACCTCCGCGCCGTGCGCGTCGACC
GGGCCGCGGGCACCGCGTGGGTGGACTCGGGCGCGACGGTCGGGGAGCTGTACTACGCCG
TCGCCAAGGCGGCGCCCGGGCTCGCGTTCTCTGCCGGCGTGCGCTCGACCATGGGC

Homology of Contig U35_4868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35650.1	527	1e-67	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi5g17300.1	518	2e-78
Arabidopsis v10	None