- Probe CUST_32095_PI390587928
- Source Contig U35_28530
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32095_PI390587928 | Hv_44K_v2 | ACATGGCATTGCTATATACCATCACAACTGTGATTCTCACTGGACAGACAATATACTATA | 586 | GeneList: brown4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.706 | 1.094 | 1.315 | 0.664 | 0.321 | 0.241 |
| Raw | 50.528 | 44.250 | 52.602 | 41.767 | 5.905 | 5.436 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361243 | 1917 | 2e-24 | 403 - 462 | 100 | 60 / 60 | plus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.1 | 2815 | 2e-24 | 2178 - 2237 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.2 | 2019 | 2e-24 | 1379 - 1438 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.3 | 3017 | 2e-24 | 2367 - 2426 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.4 | 1977 | 2e-24 | 1329 - 1388 | 100 | 60 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| JLOC1 | JLOC1_9832.4 | 2238 | 8e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9832.3 | 2093 | 8e-25 | 559 - 618 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9832.2 | 2072 | 8e-25 | 435 - 494 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9832.1 | 1898 | 8e-25 | 364 - 423 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27471 | 646 | 3e-25 | 587 - 646 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10613 | 762 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28530 | 646 | 3e-25 | 587 - 646 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19274 | 762 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus |
Contig Sequence (646 bp)
>U35_28530 646 Hv_44K_v2 TGCAGCCATCGGCACGTGGCTCGCCACTCCAACTCCAACTCTCCCTCTCTCTCTCGTTCG CTTCCTCGGCAACAGGACGAACAACTCTGGTACGAACTACATCCCCTCCTTCCCTTGCGA CGCCTTCTCTTCAAATCGTGCCGCCGCCTCGTGAATGTCCACCGACAATGCCGTGTTCCG GCCGGGGCTCGCTTCTTGGCGGCTGCGTCCATCGTTCTGACGAGATTGAGTAGCCCTACT CCCGATTCAGCCGTCTGCCTCTTCCTGCCTGTTTGAGCGCACACTCAAATGGGTATCTTC AGTGGAACGCCTCCTCCGAGCTGCCCATCAGCTCCGCATTGCGCGGAATGGGCTAAAGTC TATCTGAAGTACTGCCTGTGCAGCACAAAGGATGGTGTTGCCTTGGGTCTTGGACTGGCT AGTGTCCTCAGTTGGGGTATCGCCGAGGTGCCGCAGATCATCACAAATTACAAACAGAAG TCAACAGAAGGCCTTTCTATTGCCTTTCTGATGACCTGGATAGTTGGGGATTTGTTTAAC CTTGCTGGCTGTTTCCTGGAACCTGCTACTCTGCCAACACAGTTTTACATGGCATTGCTA TATACCATCACAACTGTGATTCTCACTGGACAGACAATATACTATA
Homology of Contig U35_28530 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g09940.2 | 397 | 5e-52 | |
| Arabidopsis v10 | None |