barSeed - Barley Seed Development Database

Probe CUST_3178_PI390587928

Source Contig U35_22948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3178_PI390587928	Hv_44K_v2	CCCCTGTAAAATGGATGCCGTTCTGGTATAACTGACCTTGATTGTCTTGTTCATAAAAAA	448	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357068	3933	3e-21	939 - 992	100	54 / 54	minus	ABC00064 ABC00146 ABC00541 ABC00668 ABC18698 ABC36822 ABC39327 ABC53030
MLOC	MLOC_64867.2	2502	3e-21	2404 - 2457	100	54 / 54	plus	ABC18698
JLOC1	JLOC1_42633.2	2826	2e-21	2402 - 2455	100	54 / 54	plus
JLOC1	JLOC1_42633.1	3041	2e-21	2617 - 2670	100	54 / 54	plus
Harvest21	ABC18698	518	1e-23	11 - 70	98	59 / 60	minus	ABC18698
Harvest35	U35_22948	519	3e-25	449 - 508	100	60 / 60	plus

Contig Sequence (519 bp)

>U35_22948 519 Hv_44K_v2
AGGCCGCGCTGCCGCAGGGCATTGTCCCCTTCGTCTTCGCCAAGGAGTACAGCGTGCACC
CTGACATCCTCAGCACGGCGGTCATATTCGGCATGCTCATCGCCCTGCCCATCACGCTCG
TCTACTACATCCTGCTCGGCCTGTGAGCCCGACTCCCTTGTAAAGGTCCATGGCTTCGCT
GCTGCGGGCTCAGGAGCAGCATGCTTGGAGTGACCACCAGGGGGCTCTTCATTTTTCCTC
CCCTCTCTCTCTCTCTCAGGGTCTCTCTAGAGCAGCAAGATAATGGTGGCGCTCCTAGCT
AGGTAGGACAATGGCGAGAGTCAGTCAACAACAGTCAGAAGGGCAGGGGAAGAAGCAAGT
GCAAGTACAGAGCTTGGGCGGGGGGACTGGGGTCGCAGAATTGGTTCGGTTCTGAAAGGG
GCTTGCGAGTTTTGGTTGGCTACGCCGACCCCTGTAAAATGGATGCCGTTCTGGTATAAC
TGACCTTGATTGTCTTGTTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_22948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None