barSeed - Barley Seed Development Database

Probe CUST_31058_PI390587928

Source Contig U35_3429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31058_PI390587928	Hv_44K_v2	GGAGTAATGAAGCCCATGTGATGCTTAATTACTATACACTTGTAGAGCTTTTTATCTGAT	1244	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66191.1	221	7e-23	51 - 110	98	59 / 60	minus	ABC08690 ABC14383 ABC49709
MLOC	MLOC_2155.1	232	7e-23	43 - 102	98	59 / 60	minus	ABC08690 ABC14383 ABC49709
MLOC	MLOC_2155.2	260	7e-23	43 - 102	98	59 / 60	minus	ABC08690 ABC14383 ABC34750 ABC49709
MLOC	MLOC_48979.1	187	3e-21	2 - 61	97	58 / 60	minus	ABC08690 ABC49709
Harvest21	ABC08690	1402	3e-25	99 - 158	100	60 / 60	minus	ABC08690
Harvest35	U35_3429	1402	3e-25	1245 - 1304	100	60 / 60	plus
Harvest35	U35_47089	711	1e-23	83 - 142	98	59 / 60	minus

Contig Sequence (1402 bp)

>U35_3429 1402 Hv_44K_v2
GCGATGATGACGGTGCGACGACGCCCTTGAGGCCGACGGCCGGGGCACCGGGGACGACGA
CCCCTTCGACACCCCCGCCAAGCGCATGCCCGTCGAGAGGCTATGGCGGTGGAGGGTTGC
TATGACGCGGACAAGCTGCTGCTGCAGGTGGACGACTCCTCATGGATGCTCAACCTATCT
CTCCTACCCCCACACATGGTGAGCTCTACTTCGTCTTTCTACCCATGGAGATCTGATGTG
ATGTGCACAAAATACTTGCAATTGTTCTCGATACAACACCCCATCACGTCTTGGTCTATT
CGGATGTGCAATTTCATTGCTATTGTGTTGTTTGATGCTTGCTTCGCAAGAGGGAAACCA
TGGATATAAGTTGAGCTTCCTTTTAATTTTATAGTAATACTAATCATTTGGTTCCATTTT
CTCTGCTGCTAGTATAGTTTGCTGCTACAGTAATCTCATTGTGATGAACTCTGCAATAAC
CAGTTTTCTCATTACACTGATGATGCAAGGTTTCTCCTCCTGCTGCTGCTGCATGTCTTC
ATCGACTTAGTTCTTCCACAGGAAGAGATATAAATCCTATACTGTTCACTGTGTAATCTG
CAGATTACTTCTTCCATTAATCATCTAGTGCTCCTATTAGTGAGATTCATCTAGTATTTT
TTTGCAAAGCATGCAATGGTTTGGAGTACTTGATCATGACCTCATGAAACCTACATGTCG
TTAGCATGTATATATATTAAATGCATTAAATCTGGTTAAATGCATTCTACTACAACAACC
AGAAGCAATCCATTTTATTAAATGCATTCTGGTTAGGATTTGGTCATAGCATCACCTTGC
TGTTCTGTTTTAAATCTGGTTGCAAGTTATTATTTTTCCAGAACCAACATCTTACATTTC
GGGCATTGGAATTTAGGATTTTTTGTATAATTTTAGTTCTGGATGTGTCCAATGCAAACA
TTACTGTGAGCTGACAAATTGATTCTAAAATGTCATATTAACTTTATTTCAGATGGTGAT
TTCTAGATTTAGTACCAATTTATTGTTGCTCTGGCCTATGCATTGTACCTTGCTCTGTAC
CAACTTATTGCATTATTTGTTATTTACTGTTAAATATGCTGTTAGATTATTTTTATTTTG
TTGCTAACCATTTTGTTGTATAACAATGAGATGCTAGCCTTTCATGTTTCTTCACAAGCA
TCAGGACAAAGAAGAAGAAGTATAGTTCAATGGATCTAGTTCTCGGAGTAATGAAGCCCA
TGTGATGCTTAATTACTATACACTTGTAGAGCTTTTTATCTGATTGTAAACTTAATGCCG
ATCACATTTATATGTGTTATATTATGTAAAAGATTGCTTTTGCTGTTATTTGAAGTATTA
TGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None