barSeed - Barley Seed Development Database

Probe CUST_30963_PI390587928

Source Contig U35_4242

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30963_PI390587928	Hv_44K_v2	AAAGGAAAATGATGGCCATCTGGCTTCAGTGCCACAGTTACTCTGGAAGTCCAATTCTTC	1664	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.887	1.855	1.120	0.920	0.613	0.540
Raw	363.366	531.150	292.361	371.463	88.717	85.102

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250606.1	2288	2e-24	1668 - 1727	100	60 / 60	plus	ABC12367 ABC35010
MLOC	MLOC_77890.5	1480	7e-23	870 - 929	98	59 / 60	plus	ABC35010
MLOC	MLOC_77890.6	1482	7e-23	872 - 931	98	59 / 60	plus	ABC35010
MLOC	MLOC_77890.12	655	7e-23	50 - 109	98	59 / 60	plus	None
MLOC	MLOC_77890.4	1534	7e-23	784 - 843	98	59 / 60	plus	ABC35010
MLOC	MLOC_77890.2	1366	7e-23	788 - 847	98	59 / 60	plus	ABC35010
MLOC	MLOC_77890.1	1480	7e-23	868 - 927	98	59 / 60	plus	ABC35010
MLOC	MLOC_77890.8	1384	7e-23	782 - 841	98	59 / 60	plus	ABC35010
MLOC	MLOC_77890.9	1389	7e-23	787 - 846	98	59 / 60	plus	ABC35010
MLOC	MLOC_77890.7	1529	7e-23	782 - 841	98	59 / 60	plus	ABC35010
JLOC1	JLOC1_51916.7	2095	4e-23	801 - 860	98	59 / 60	plus
JLOC1	JLOC1_51916.5	2447	4e-23	837 - 896	98	59 / 60	plus
JLOC1	JLOC1_51916.4	2448	4e-23	838 - 897	98	59 / 60	plus
JLOC1	JLOC1_51916.2	2449	4e-23	839 - 898	98	59 / 60	plus
JLOC1	JLOC1_51916.1	2448	4e-23	838 - 897	98	59 / 60	plus
Harvest35	U35_4242	1741	3e-25	1665 - 1724	100	60 / 60	plus

Contig Sequence (1741 bp)

>U35_4242 1741 Hv_44K_v2
TGCAGGCAATTCGTCACGAGGGATCATGGAGTGTCGTGCTGATGGGAAGGAACTGACACA
ACTGTTAACTCATTGCCCGAAGCTCACTGAGTTGGTAGTGAGGAGTTGTGAGAAGATAAC
AGAGATTGGCGTGCTGGAGCTTCAAACGGAAATGGCGGCAGCGTCATCTCCAGTTAATGA
AATTGAAACTGAGCATGCACAAGGAGGACACCATCAGACAAGAGGAGAGGAGGTAGAAGA
AGCAGTGGCAGGAGGAGAAGGTCTCCTGCTTCTGCCTCGGCAACTAGAGGAGTTGACCAT
CTCTGATTGCAGAGAGCTGCGGTTACTCTCCGATTCAATTGGCAAGGACAACACACACGG
ACGAGGGCTCCAGAGTCTCTGCTCCCTCCGCTCGTTGGAGATATATGATTGCCCCAGGTT
CCTCTCGTCCTACTCGTCCTCCACCTTATCTTGTTTCCCCTTCCCCGTGTCCCTGCAAGA
CCTCTGTCTGCTTGGCGTGGAGGGCATGGAGACTCTGGCTCCCCTCTCAAATCTCATCTC
TCTCACCAGTTTAACCATGTGTAATTGTGGGGATCTAAGAGGCGAGGGTTTATGGCCTCT
CGTCGCCCAGGGCCGCCTCACAGAATTGCTCATCTTTGGAACTCGAAAATTCTTCACCGG
TTCTGAGCCCTCACGGCTGCATGGCCAAGAGATTCCTTCATCCAAACTCGAACGTGTTTT
TACAGATGACTTGACGGGAGTCCTTACTGCGCCCATCTGCAGACTCCTCTCTTCCTCCCT
TACCGAATTAACCTTTTGTGAGAACCAAGAGGTGGAGCGCTTCACAGAGGAGCACGAGGA
GGCCCTTCACCTCCTCAATTCTCTCCAGGAACTCTTTTTTCGGGATTGTGGGAAGCTGCA
GCGCCTCCCTGCAGGGTTAGCCCGGCTTGCCAGCCTCAAGATATTACGGATTTGGTGGTG
TCCAGCCATCAGGTCGCTGCCCAAGGACGGACTGCCAAGTTCTCTGCAAGAACTAGATAT
CAAAGTCTGTCCTGCCATCAAATCTCTGCCCAAGGACGGCCTGCCAAGTTCTCTACAAGA
ACTAGTGATCAGAAACTGCCCTGCCATCAAATCTCTGCCCAAGGACGGCCTGCCAAGTTC
ACTACGGAAATTAGAAGTTTGTGATGGCATCAGCGAGGAACTTAAAAGGCAGTGCCGCAA
GTTAAAAGGAACCATTCCAATAATCATAGACTACTAAGGCTAATCCAAGAGGTCTTCTTG
GATTTGTACATTCTTCTAGCCTAGCCTTGTTGATCCAGTTCTCTCTCTATCCAAGAACAG
AAGGTCCCAGACTATAGAATCCATCCATTACTAAACTGGCCTCTGGCATGAAGTTGTAGA
AGTGCTGTTATCCTTGAAGTTTTTTGCATACACGAGCAGTTCGGATGCCATGGCCTTGGG
TGGTATCTCCTACATAAATATGGTTCATTGTTCCAAACACTTCTGCTCTGATGCCAGAAT
TATTCTTGATCTGTAAGCTGCAGTGAACCAAACTCTTCTTCACCTTAGACTAGTTGACTC
ATCAACCAGGAACTGCGGCGCTGAATAGCCAATCGGGCCAATCCCGTTCACTTTCACACG
ATGTAACATGGAAGGTACTGGGAAATAATTGACGTTTTCTTCACAAAGGAAAATGATGGC
CATCTGGCTTCAGTGCCACAGTTACTCTGGAAGTCCAATTCTTCCGTGTTCTTGCAGCAC
A

Homology of Contig U35_4242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g29690.1	1505	6e-79	protein\|NBS-LRR disease resistance protein, putative, expressed
Brachypodium v1_2	Bradi2g36030.1	1382	3e-102
Arabidopsis v10	None