barSeed - Barley Seed Development Database

Probe CUST_30962_PI390587928

Source Contig U35_4243

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30962_PI390587928	Hv_44K_v2	CTTGGACTTGCACATTCTTATGGACCTTGGAGATCTCTCATCTTCTAGTCGCAAAAACAG	1064	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355483	2425	2e-24	2362 - 2421	100	60 / 60	plus	ABC12367
MLOC	AK250606.1	2288	3e-22	555 - 613	98	59 / 60	plus	ABC12367 ABC35010
Harvest21	ABC12367	1026	3e-25	4 - 63	100	60 / 60	minus	ABC12367
Harvest35	U35_4243	1127	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1127 bp)

>U35_4243 1127 Hv_44K_v2
GACAACACACACGGAGGAGGGCTCCAGAGTCTCTGCTCCCTCCGCTCGTTGGAGATATAT
GATTGCCCCAGGTTCCTCTCGTCCTACTCGTCCTCCACCTTATCTTGTTTCCCCTTCCCC
GTGTCGTCCCTGCAAGACCTCTGTCTGCTTGGCGTGGAGGGCATGGAGACGCTGGCTCCC
CTCTCAAATCTCATCTCTCTCACCAGTTTAACCGTCCGTAGATGTGGGGATCTAAGAGGC
GAGGGCTTATGGCCTCTCGTCGCCGGGGGCCGCCTCACACGATTAGGCATCTTTGGAACC
CGAAAATTCTTCACTGGTTCTGAGCCCTCACGGCTGCATGACCAACAGATTCCTTCCTCT
TCATCCAAACTCGAACATCTCACTACAGATGACTTGACGGGAGTCCTTACTGCGCCCATC
TGCAGACTCCTCTCTTCCTCCCTTACCAGATTAACCTTTTTGAACATCCAAGAGGTGGAG
CGCTTCACAGAGGAGCACGAGGAGGCCCTTCACCTCCTCAATTCTCTCCAGAAACTCGTT
TTTTGGAATTGTAGGAAGCTGCAGCGCCTCCCTGCAGGGTTAGCCCAGCTTGCCAGCCTC
AAGATATTACGGATTTGGAAGTTTCCAGCCATCAGGTTGCTGCCCAAGGACGGACTGCCA
AGTTCTCTGCAAGAACTAGATATCAAAGACTGTCCTGCCATCAAATCTCTGCCCAAGGAC
GGCCTGCCAAGTTCACTACGGAAATTAGAAGTTTGTGGTGGCATCAGCGAGGAGCTTAAA
AGGCAGTGCTGCAAGTTAAAAGGAACCATTCCAATAATCATAGACTACTAAGGCTAATCC
AAGAGGTCTTCTTGGATTTGTACATTCTTCTAGCCTAGCCTTGTTGATCCAGTTCTCTCT
CTATCCAAGAACACAAGGTCCCAGACTATAGAATCCATCCATTACTAAACTGGCCTCTGG
CATGAAGTTATAGAAGTGCTGTTATCCTTGAAGTTTTTTGCATACACGAGCAGTTCGGAT
GCCATGGCCTTGGGTGGTATCTCCTACATAAATATGGGATCTGTCTTGGACTTGCACATT
CTTATGGACCTTGGAGATCTCTCATCTTCTAGTCGCAAAAACAGAAG

Homology of Contig U35_4243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49350.1	2219	2e-60	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi2g36030.1	1382	3e-73
Arabidopsis v10	None