barSeed - Barley Seed Development Database

Probe CUST_30799_PI390587928

Source Contig U35_9077

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30799_PI390587928	Hv_44K_v2	AAGCAGCAAAGCTAGCCAGCTAACTTACCAAGTACTCGCACTAGCTCTTCTCTACTTGTT	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18474.1	1882	6e-24	1818 - 1876	100	59 / 59	minus	ABC11623 ABC23667 ABC44857
JLOC1	JLOC1_12787.1	1975	3e-24	1916 - 1974	100	59 / 59	minus
Harvest21	ABC20817	611	3e-25	11 - 70	100	60 / 60	plus
Harvest35	U35_9077	612	3e-25	11 - 70	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_9077 612 Hv_44K_v2
CCCGGGCTGCAAGCAGCAAAGCTAGCCAGCTAACTTACCAAGTACTCGCACTAGCTCTTC
TCTACTTGTTGCTCTCCGGCAGCAAAGCAAGCTACCTCCACTTCATTAGCCAAGCCTCTA
CCTCCTTTGCTCCTACAAAGATGGGCAGCTTGGACACCAACCCAATGTCCCTCTCCGCCT
TGCCCAACGACAAGGCCGCCTTCGAGCCGCTCAACCCCGAAGATGTCCGCGCATACCTTC
ACAAGGCCGTCGACTTCATCTCCGACTACTACACCAACATCGAGTCCATGCCCGTTCTCC
CTAATGTGAAGCCGGGATACCTGCAAGACGAGCTAAGCGCGTCCCCGCCAACCTACTCCG
CGCCATTCGATGTCACCATGAAGGAGCTTAGGACCTCCGTCGTCCCTGGCATGACGCACT
GGGCTAGCCCCAACTTCTTTGCCTTCTTCCCCTCCACCAACAGCGCCGCTGCCATCGCCG
GCGACCTCATCGCCTCTGCGATGAACACCGTCGGATTCACGTGGCAGGCCTCGCCTGCAG
CCACCGAGATGGAGGTTCTCGCTCTCGACTGGCTTGCACAGCTTCTACGTCTACCCACCA
CCTTCATGAACC

Homology of Contig U35_9077 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04540.1	515	6e-71	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g14740.1	511	7e-79
Arabidopsis v10	None