barSeed - Barley Seed Development Database

Probe CUST_30751_PI390587928

Source Contig U35_14127

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30751_PI390587928	Hv_44K_v2	GATAGTTGATGACGAGTACATCATCATTGGGTCTGCAAACATCAACCAAAGGTCAATGGA	2115	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56293.2	2456	2e-24	1697 - 1756	100	60 / 60	plus	ABC03042 ABC03043 ABC35377
MLOC	MLOC_56293.4	2134	2e-24	579 - 638	100	60 / 60	minus	ABC03042 ABC03043 ABC35377
MLOC	MLOC_56293.3	2934	2e-24	676 - 735	100	60 / 60	minus	ABC03042 ABC03043 ABC35377
MLOC	MLOC_56293.1	3214	2e-24	707 - 766	100	60 / 60	minus	ABC03042 ABC03043 ABC35377
JLOC1	JLOC1_36395.2	3212	8e-25	2349 - 2408	100	60 / 60	plus
JLOC1	JLOC1_36395.1	3361	8e-25	2498 - 2557	100	60 / 60	plus
Harvest21	ABC03043	2885	3e-25	2116 - 2175	100	60 / 60	plus	ABC03043
Harvest35	U35_14127	2885	3e-25	2116 - 2175	100	60 / 60	plus

Contig Sequence (2885 bp)

>U35_14127 2885 Hv_44K_v2
GTGCCTCCCTCCCTCCCGTTCGTCTCCCTCTTCCTCTTGTCTTGTCCTCTTCATCAGCGG
TGGTGGTGGTGGCAGGTGACTCGTAGGAGTGCGGAGGAGGGGTCCTTCGGTCGCCATGGC
TCAGATCTTGCTCCATGGGAACCTCCACGTCACCATCTTCGAGGCCTCGTCGCTCTCCCA
CCCCGGCCGCGCCAGCGGCGGCGCCCCCAAGTTCATCCGCAAGTTTGTGGAGGGGATTGA
AGACACCGTCGGTGTCGGCAAAGGCACCTCCAAGCTATATGCCACCATTGATCTTGAGAA
AACTCGTGTTGGGCGTACCAGGATGCTGAGCAACGAGCCTGTCAACCCTCGCTGGTACGA
GTCTTTCCACATCTACTGCGCGCACCTTGCCGCCGATGTGATCTTCACCGTGAAGGCCGA
CAACGCTATCGGGGCGACCCTCATTGGGAGGGCGTACCTGCCTGTCGGAGAGCTCCTGGA
AGGAGAGGAGATCGACAGGTGGCTTGAAATCTGTGATGAGAACCGGGAGCCTGTTGGTGA
GAGCAAGGTCCATGTGAAGCTTCAGTACTTTGGCGTTGAGAAGGACCGCAACTGGGCTAT
GGGTGTCCGGAGCGTCAAGTTTCCTGGTGTTCCTTACACCTTCTTCTCCCAGAGGCAAGG
ATGCAAGGTTACATTGTACCAAGATGCTCATGTCCCAGACAACTTTATTCCCAATATCCC
GCTTGCGGATGGCAAGAACTATGAGCCTGGCAGGTGTTGGGAAGATATCTTTGATGCCAT
AAGCAATGCTCAGCATTTGATTTACATCACCGGCTGGTCTGTGCACACTGAGATCACCTT
GATTAGGGACACCAATCGCCCGAAACCTGGAGGAGATGTCACTCTCGGAGAGTTGCTCAA
GAGGAAGGCCAGCGAAGGCGTCCGGGTCCTTATGCTAGTGTGGGATGATAGAACTTCTGT
TAGCTTGCTGAAGAGAGATGGCTTGATGGCCACCCATGACGAGGAGACTGCAAATTACTT
TCAAGGCACGGACGTGCACTGTGTTCTGTGCCCTCGTAACCCCGATGATTCAGGCAGCAT
TGTTCAGGATCTGCAGATCTCAACCATGTTCACGCACCATCAGAAGATAGTATGTGTTGA
CGATGCATTGCCAAGCGAGGGCTCCGAGCAAAGGAGGATACTCAGCTTCGTTGGTGGCAT
TGACCTCTGCGACGGAAGATATGACACTCAGTACCACTCCTTGTTTAGGACACTTGACAC
TGTCCACCATGATGACTTCCACCAGCCTAACTTTGGGACTGCTTCCATCACCAAAGGTGG
CCCAAGAGAGCCATGGCATGATATCCATTCACGATTGGAAGGTCCAATTGCCTGGGATGT
TCTTTACAATTTCGAGCAGAGATGGAGAAAGCAGGGTGGCAAAGATCTTCTCGTGCAGCT
CAGGGATCTCTCTGACATAATTATCCCCCCATCTCCCGTCATGTTCCCAGAGGACAGAGA
TACATGGAATGTCCAGCTCTTCAGATCTATTGATGGTGGTGCTGCTTTTGGCTTCCCTGA
CACTCCCGAGGAAGCTGCCAGGGCTGGGCTTGTAAGTGGAAAGGATCAAATCATTGACAG
GAGCATCCAGGATGCATACATCAATGCCATTCGGCGGGCGAAGGACTTCATCTACATTGA
GAACCAGTACTTCCTTGGAAGCTCCTACTGCTGGAAACCTGAAGGAATCAAGCCTGAAGA
AATTGGTGCTCTGCATGTGATTCCTAAGGAGCTTTCGTTGAAGATTGTCAGTAAGATTGA
AGCTGGGGAACGGTTTACTGTTTATGTTGTGGTGCCAATGTGGCCTGAGGGCGTTCCAGA
GAGTGCATCTGTACAAGCAATTCTGGACTGGCAAAGGAGAACAATGGAGATGATGTACAC
TGACATCACACAAGCTCTTGAGGCAAAGGGAATTGAAGCAAACCCCAAGGAATACCTCAC
TTTCTTCTGCCTAGGTAACCGGGAGGTGAAGCAGGATGGGGAATATGAACCCCAGGAGCA
ACCAGAACCTGATACTCATTACATTCGTGCTCAAGAGGCTAGGAGGTTCATGATCTACGT
TCATACCAAAATGATGATAGTTGATGACGAGTACATCATCATTGGGTCTGCAAACATCAA
CCAAAGGTCAATGGACGGCGCCCGGGACTCCGAGATTGCCATGGGCGCATACCAGCCATA
CCATCTAGCCAACAGGGAGCCGGCCCGGGGCCAGATCCACGGCTTCCGGATGGCGCTGTG
GTACGAGCACCTAGGTATGCTGGATGACGTGTTCCAGCGCCCGGAGAGCGTCGAGTGTGT
CCAGAAGGTGAACAGGATCGCCGACAAGTACTGGGACTTATACTCCAGCGACGACCTGGA
GCAGGACCTCCCCGGCCACCTGCTGAGCTACCCCATTGGTGTCGCCAACGACGGCGTGGT
GACGGAGCTGCCTGGCATGGAGTTCTTCCCCGACACCCGGGCCCGCATCCTCGGCACCAA
GTCGGACTACCTTCCCCCCATCCTCACCACATAGATTGCGTCCTGCATTTCCGGTGTGTG
GCCTCGGTTTGGTGGTTCCTTTGGTGATTCAGAACTTGTGTTTCAGAAAATAGCAGGTTG
TTATAGTTGTGGGACAGTTAATAAGCGCAGTGGTGTGCATGGTTGAGAAACGCGGTAGTG
ACTATAGGAGGACTGATGTGTTGCCACGACCTTTGTAATATGAGACTTGGATACTTTACA
CGGTTTCTGATGTTTGTATTACTGTTTAATTATAAATTGTCAATGTTTAGTTGCTTAAAA
AAAAAAAAAAAAAAAGGATCTTTAATGGTGGAAAACAAAGTTTTTTTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_14127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g07760.2	813	protein\|phospholipase D, putative, expressed
Brachypodium v1_2	Bradi2g04480.1	812
Arabidopsis v10	AT3G15730.1	810	\| Symbols: PLDALPHA1, PLD \| phospholipase D alpha 1 \| chr3:5330835-5333474 FORWARD LENGTH=810