barSeed - Barley Seed Development Database

Probe CUST_30575_PI390587928

Source Contig U35_17790

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30575_PI390587928	Hv_44K_v2	AAACTATTGGAACGCCAAAGCCATACACTGACATGGATCTGCCAGGAATTAATCCACTGC	671	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355775	1429	2e-24	720 - 779	100	60 / 60	plus	ABC08511 ABC15629 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
Harvest21	ABC08510	841	3e-25	545 - 604	100	60 / 60	plus
Harvest35	U35_17790	1397	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (1397 bp)

>U35_17790 1397 Hv_44K_v2
CTCTCGCTTCCCCTTTCCTCCATCTCCCACCCCTCGCTCCCACCCCGCAACCTCCTCGCG
CAGCCGCAGCTCAGGTTCCTCGCACCGCGCCGCCGGCCAGCAGAAGCAGGAGATGCCGCC
GCCCGCCATGGCGACGCCGCAGGCACCCTCCCCTCCCACGCCGCCCCCATGGTCTTCCCC
ACGACCCTACCCATCCCGCCGCCGCCGCGCAGCACGGTGCCGTCCTCCTCCCCCGCCTCC
CCTCGGCTGGCCGGCGAGGTCCCGGGCTCCGATTCGCGAAAAGGTACGAGCTTTCTGCCC
TCCGGCGGCCGCCCCAATCCCCGGCCAGTCCCCCCGTATTTTCGGCCGCGCCGCCCAGAT
CCGCCCCCGCCAGATCCGCCCCTGCCAGCTCCCCCTGTGTTTGGATAGGAAAAATGTTGC
GGACAAGCAGGTGAGGTGGACAGATATCGGTGAGAAGAAACAGGAGCTCGTCCCCAACAT
TGAAAAGGACCATGCCAAGCAGGTGAGGATGGCGGAGAACAGCAGTCGGATACAGGAGCT
GGTACCCAACGTAAAAAAGGATCGCTCATCACATAGAAGAAGCATCGCTGAGCTGCGGAG
GAGGACGGAGATCAGCAAGCGGGTGCGGAATCTGCAAGAGCTTGTCCCCAACATGGAGAA
GATAATTAAACAAACTATTGGAACGCCAAAGCCATACACTGACATGGATCTGCCAGGAAT
TAATCCACTGCCAACCAACATGTCCGACATGTTGGATCTGGCTGTTGATTACATAAAGGA
ACTCCAGATGCAGATCAAGACCACGGACCTCGTCATGGCGCTTTCGCTTGTTGATTCACT
AAAGGTGATGAAGGAAGAAGAGGTGATTTGCACGTGCTTGCCGAGCAAGCAGAACCACTC
GCCGGCTGATGAAGCTCAACAGCCGACGCAAAGCAAGCCGACGCTGGATGAAGCATCTGC
GATCTTAGTTCGCTTGTGGGCATTGCAAGGAATATTGAAAGAATCTCATTCGCTTTTCGC
GATGTTTCATGGACCCATTCGAACTTTACTTGACACACAACCAAGTGCTGAATTTGCCCG
TGCTGAATATTGAAAGAATCCACACATTTGTCACAGTGCTGAATTCTTCCGAGTCTCATT
TTACTGCTATCTAAAATGTTAGCATTTTTTTCACACAGCGCTTGAGCAGATAGCAAGCAC
TGCGTAGTCTATGATGCCAAAATTAGTGTTCCATTTTTTAGCAGATATGGACATGAAGGC
ATTTGATTTAGTGCCAAATATTACTTACTAATGCCCGCAAAGTATCGCTGTGTATTATAT
TTGCTATGGAGCTATGTATGTATGGATGCTATGGAACTATATGTATATATGGATGCTATG
AATTTGGAATGTATGCA

Homology of Contig U35_17790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None