barSeed - Barley Seed Development Database

Probe CUST_30440_PI390587928

Source Contig U35_29247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30440_PI390587928	Hv_44K_v2	AGACCTCCGTGAAGAACTGCGTGACGCAGGTGTCGAAGAAGGTGCTGACCATGAACCCTA	243	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64900.1	2753	2e-24	739 - 798	100	60 / 60	minus	ABC01797 ABC01799 ABC01803 ABC01805 ABC45783
JLOC1	JLOC1_42651.1	2750	8e-25	1727 - 1786	100	60 / 60	plus
Harvest21	ABC28483	689	3e-25	244 - 303	100	60 / 60	plus
Harvest21	ABC01803	2523	3e-25	1631 - 1690	100	60 / 60	plus	ABC01803
Harvest21	ABC46358	439	5e-23	81 - 136	100	56 / 56	plus
Harvest35	U35_29247	689	3e-25	244 - 303	100	60 / 60	plus
Harvest35	U35_14243	2548	3e-25	1655 - 1714	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_29247 689 Hv_44K_v2
GCTGACCTCCAACCTGGCAGGCAGCCGCAACCCCGCTTGGACACGGCTTCAAGGGCACCG
AGATCGCCATGGCTTCCTACTGCTCTGAGCTCCAGTACCTTGCCAACCAGGACGTGAACT
CTCTCGGCCTCGTCTCGGCCAGGAAGACCGCCGAGGCTGTGGACATCCTGAAGCTCATGT
CCTCCACATACATGGTGGCGCTGTGCCAGGCCATCGACCTCCGCCACCTTGAGGAGAACA
TCAAGACCTCCGTGAAGAACTGCGTGACGCAGGTGTCGAAGAAGGTGCTGACCATGAACC
CTACCGGCGACCTCTCCAGCGCGCGCTTCAGCGAGAAGAGCCTCATCACCGCCATCGACC
GCGAGGCCGTGTTCAGCTACGCCGACGACGCATGCAGCGCCAACTACCCACTGATGCAGA
AGCTGCGCGCCGTGCTCGTGGACCACGCCCTGACCGCCGGCCCCGGCGAGGCCGAGAGCG
AGGCCCACGGTGTTCTCCAAGATCAACAAGTTCGAGGAGGAGCTTGCGGTCGGCCCTGCC
GCGGGAGATCGAGGCCGCCCGCGTGGCCTTCGAGAACGGCACGGCGCCCATCCCCAACCT
GATCAAGGAGAGNCAGGTCGTTCCCGCTGTACCGGCTTCGTCCGCGAGGAGCTCGNNCTG
CGTGTACCTCACCGGCGAGAAGCTGCTGT

Homology of Contig U35_29247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41630.2	702	7e-78	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi3g49250.2	708	3e-80
Arabidopsis v10	AT3G10340.1	707	1e-59	\| Symbols: PAL4 \| phenylalanine ammonia-lyase 4 \| chr3:3204260-3207809 FORWARD LENGTH=707