barSeed - Barley Seed Development Database

Probe CUST_30318_PI390587928

Source Contig U35_23012

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30318_PI390587928	Hv_44K_v2	ATGCCTTAACACAGGTGCTCTGTTGTACATGGTACCACTTGGCCTTTCTTCTTCTATCAG	1049	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353595	3131	2e-24	1082 - 1141	100	60 / 60	plus	ABC02414 ABC12996 ABC31550
MLOC	MLOC_76541.1	1013	2e-24	860 - 919	100	60 / 60	minus	None
MLOC	MLOC_47119.4	751	2e-24	390 - 449	100	60 / 60	minus	None
MLOC	MLOC_47119.1	1116	2e-24	746 - 805	100	60 / 60	minus	ABC38783
MLOC	MLOC_47119.2	748	2e-24	390 - 449	100	60 / 60	minus	None
MLOC	MLOC_47119.3	704	2e-24	335 - 394	100	60 / 60	minus	None
JLOC1	JLOC1_51038.1	1060	8e-25	108 - 167	100	60 / 60	plus
JLOC1	JLOC1_30426.1	760	8e-25	312 - 371	100	60 / 60	plus
Harvest21	ABC16949	1306	3e-25	1050 - 1109	100	60 / 60	plus
Harvest35	U35_23012	1306	3e-25	1050 - 1109	100	60 / 60	plus

Contig Sequence (1306 bp)

>U35_23012 1306 Hv_44K_v2
GACCTCGGCGCTCCCGCACCCGCCGCTCATCCCCGCCTCCAACCCCTCCGCCCCTGAAGC
CGGCCAGCCGACCCCCCTCCCGTCGCCCCCCACCCGATTTCCTAATTGGACCCATCCATG
GACGCCAAGCCCAGCGCGCCCGTCCACGAGCCGCTGCTCGCGGCGGCGCGGCCCGGCAAG
GACTCCGCGGCGGCGGCGGCGGCGGCGGCCGAGGACGACGACGGGGCGGCGCGTCAGGGC
CTCGCCGCGGCGGAGGTGAAGCGGCTGGTGCGGCTCGACGGGCCCCTCGTCGCCAGCTGC
ATCCTCCAGAACGTCGTCAACATGGTGTCTGTCATGGTCGTCGGCCACCTCGGCGAGCTG
CCCCTCGCCGGCGCCTCCCTCGCCACCTCCCTCGCCAACGTCACCGGCTACAGCCTCCTC
GCGGGCATGGCGACGGCGATGGACACGCTCTGCGGCCAGGCATACGGCGCGCGGATGTAC
CACCGGCTCGGCGTCTACAAGCAGTGCGCCATGGTGGTGCTCTCGCTCGCCTGCGTCCCC
ATCGTCCTCATCTGGGTCAACACCACCAGGATCCTCGTCTTCCTCGGCCAGGACCCGGCC
ATATCGGCCGTGGCCGGCGAGTACGCGCGGTGGACGATCCCGTCGCTCCTCGTGTACGTG
CCCCTGCAGTGCCACATACGGTTCTTGCAGTCGCAGACCACCGTCCTGCCCGTGACGGCC
AGCTCCGGCGCCACCGCGCTCTGCCACCCGCTCGTGTGCTGACTGCTGGTGTTCAAGGCC
GGCCTGGGGAGCAAGGGCGCCGCGCTCAGTAACGCCGTCTCCTACGGCATCAATCTGGTC
ATACTGGCTCTGTACGTCAGGCTGTCCGCCACCTGCAAGAACACCTGGAGCGGCTTCTCC
CGGGAGGCCTTCAAGGAGCTGCGCCAGTTCACCGCGCTCGCCATGCCGTCCGCCATGATG
ATCTGCTTGGAGTGGTGGCCATTTGAGGTCCTTGTGCTTCTCTCTGGGCTTCTGCCCAAT
CCTCAGCTTGAGACATCAGTGCTGTCAATATGCCTTAACACAGGTGCTCTGTTGTACATG
GTACCACTTGGCCTTTCTTCTTCTATCAGCACGCGCGTCTCAAACGAACTTGGGGCAGGC
CACCCAGAAGCAGCAAAGCTCGCGATGCGAGTGGTCATGTACATGGCCTTGTCTGTAGGA
TTTGTGCTGGCCTTGACCATGATCTTGCTACGGAATGTTTGGGGGGTACCTGTACAGCAA
CGAGCAGGAAATCGTCACATACATGTCCAGGATGCTGCCAGTTCTC

Homology of Contig U35_23012 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g20470.1	487	0.0	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi3g22880.1	473	2e-161
Arabidopsis v10	AT5G52450.1	486	2e-124	MATE efflux family protein \| chr5:21289042-21291749 REVERSE LENGTH=486