barSeed - Barley Seed Development Database

Probe CUST_30112_PI390587928

Source Contig U35_23774

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30112_PI390587928	Hv_44K_v2	TTCAGGTGGAACTTCACGATGCCGGCAATCGTCCTGGGATCCATCTCCATCCTGTCGGAT	881	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357068	3933	2e-24	1628 - 1687	100	60 / 60	minus	ABC00064 ABC00146 ABC00541 ABC00668 ABC18698 ABC36822 ABC39327 ABC53030
MLOC	MLOC_64867.3	2244	2e-24	1498 - 1557	100	60 / 60	plus	ABC18698
MLOC	MLOC_64867.1	1849	2e-24	1712 - 1771	100	60 / 60	plus	None
MLOC	MLOC_64867.2	2502	2e-24	1709 - 1768	100	60 / 60	plus	ABC18698
JLOC1	JLOC1_42633.2	2826	8e-25	1707 - 1766	100	60 / 60	plus
JLOC1	JLOC1_42633.1	3041	8e-25	1707 - 1766	100	60 / 60	plus
Harvest35	U35_23774	1126	3e-25	882 - 941	100	60 / 60	plus

Contig Sequence (1126 bp)

>U35_23774 1126 Hv_44K_v2
TTCCCCGACACGCTGGCGCCATCGCCTCCATCGTCGTCGACCCGGACGTCGTCTCGCTCG
ACGGCCGCAGCAACGCCATCGAGACCGAGGCCGAGGTCAAGGAGGACGGCAAGATTCACG
TCACTGTCCGCCGCTCCAGCGCGTCGCGCTCCGACATCTACTCGCGCCGCTCCATGGGAT
TCTCCAGCACCACGCCGCGCCCCAGCAACCTCACCAACGCCGAGATCTACTCGCTGCAGT
CGTCGCGGAACCCCACGCCCAGGGGCTCCAGCTTCAACCACACCGACTTCTACTCCATGG
TCGGCCGGAGCTCCAACTTCGGCGCCGCCGACGCGTACGGCATCCGGACCGGCGCCACGC
CGCGCCCGTCCAACTACGAGGAGGACGCGCCCAAGCCCAAGCACCCGGCGCCCGGGGCGG
GGCACTACCCCGCGCCGAACCCGGCGGTGGCCGCGGCGCCCAAGGGGCCCAAGAAGCCGG
CCGCGAACGGGCAGGCCAAGGGCGAGGACCTCCACATGTTCGTCTGGAGCTCCAGCGCGT
CGCCGGTGTCGGACGTCTTCGGCGGCGGCGCACCGGACTACAACGACGCCGCGGCCGCTA
AGTCCCCCCGCAAAATGGACGGAGCCAAGGAGAGGGAAGACTACAACGTGGAGCGAGACG
ACTTCAGCTTCGGGAACAGGGGCGCGCTGGACAGGGACGCGGAGGCCGGCGACGAGAAGG
CCATGACGGCGGACCCGAACAATGCGATGAGCGCGGGGCCGACGGCGATGCCGCCGACGA
GCGTGATGACGCGGCTGATCCTGATCATGGTGTGGCGCAAGCTCATCCGCAACCCAAACA
CCTACTCCAGCCTCATCGGCCTCATCTGGTCGCTCGTCTGCTTCAGGTGGAACTTCACGA
TGCCGGCAATCGTCCTGGGATCCATCTCCATCCTGTCGGATGCGGGGCTAGGAATGGCCA
TGTTCAGCCTCGGTCTGTTCATGGCGCTGCAGCCGCGGATCATCGCGTGCGGGAACAAGG
TGGCGACGTACGCCATGGCGGTGCGGTTCCTCGCCGGCCCGGCCGTCATGACCGCCGCCT
CCTTCGCCGTGGGCCTCCGCGGCACGCTCCTGCACGTCGCCATCGT

Homology of Contig U35_23774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50960.2	575	0.0	protein\|auxin efflux carrier component, putative, expressed
Brachypodium v1_2	Bradi1g45020.1	597	2e-176
Arabidopsis v10	AT1G23080.1	619	2e-101	\| Symbols: PIN7, ATPIN7 \| Auxin efflux carrier family protein \| chr1:8180768-8183406 REVERSE LENGTH=619