barSeed - Barley Seed Development Database

Probe CUST_29690_PI390587928

Source Contig U35_10516

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29690_PI390587928	Hv_44K_v2	AAGGCGGTGATCAACCAGTTCGAGCAGAAAGGACGGTACCGCAACGTGCTCGACATGAAC	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375789	2239	2e-24	1511 - 1570	100	60 / 60	plus	ABC04810 ABC04811
MLOC	AK366843	2191	2e-24	1489 - 1548	100	60 / 60	plus	ABC04810 ABC04811
MLOC	MLOC_65736.2	1645	2e-24	665 - 724	100	60 / 60	minus	ABC04810 ABC04811
MLOC	MLOC_65736.3	1452	2e-24	402 - 461	100	60 / 60	minus	ABC04811
MLOC	MLOC_65736.1	1745	2e-24	671 - 730	100	60 / 60	minus	ABC04810 ABC04811
JLOC1	JLOC1_43276.1	1778	8e-25	1026 - 1085	100	60 / 60	plus
Harvest21	ABC21452	578	3e-25	431 - 490	100	60 / 60	plus
Harvest35	U35_10516	578	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_10516 578 Hv_44K_v2
GCCGATCAACTGGAAGAAGTACTGGAAGGGGTGGGAGAGGAGCAAGGAGGACCTCAACGC
CGAGCAGGAGGCGATCGAGGCGGTCGCCCGGAGCCTCTGCTGGAAGAAGATCAAGGAGGC
CGGCGACATCGCCGTCTGGCAGAAACCCGACAACCACGCCGGCTGCAAGGCATTCTGGAA
GGCCGCCAAGTCCCCGCCTTTCTGCTCCAAGAAAAACGCCGACGCAGCATGGTACGACAA
GATGGAGGCCTGCGTGACGCCACTGCCGGAGGTCTCGGACGCGAGCGAGGTGGCCGGCGG
CGCGGTGAAGAAATGGCCGCAGAGGCTCACCGCCGTGCCGCCCAGGGTCTCCCGGGGCAC
GGTGAAGGGCGTGACGGCCAAGGCGTTCTTGCAGGACACGGAGCTGTGGAGGAAGAGGGT
CCGCCACTACAAGGCGGTGATCAACCAGTTCGAGCAGAAAGGACGGTACCGCAACGTGCT
CGACATGAACGCCCGCCTCGGCGGTTTCGCGGCGGCGCTGGCGAGTTACCCGCTGTGGGT
CATGAACATGGTCCCGACCGTGGCCAACTCCAGCGCAC

Homology of Contig U35_10516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45310.1	647	5e-119	protein\|dehydration response related protein, putative, expressed
Brachypodium v1_2	Bradi3g51560.1	640	4e-120
Arabidopsis v10	AT4G10440.1	633	8e-77	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:6459728-6461932 REVERSE LENGTH=633