barSeed - Barley Seed Development Database

Probe CUST_29611_PI390587928

Source Contig U35_39743

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29611_PI390587928	Hv_44K_v2	AGAAGCGGCTTGCACGGGATTTGCAAAGTTCAACTTCTTTCAGATCGTGGATGCTACAAA	443	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356929	1775	2e-24	697 - 756	100	60 / 60	plus	ABC13498 ABC13499
MLOC	MLOC_13260.1	1136	2e-24	448 - 507	100	60 / 60	minus	None
MLOC	MLOC_13260.2	1347	2e-24	409 - 468	100	60 / 60	minus	None
MLOC	MLOC_13260.4	1355	2e-24	305 - 364	100	60 / 60	minus	None
MLOC	MLOC_13260.3	1350	2e-24	409 - 468	100	60 / 60	minus	None
JLOC1	JLOC1_8953.2	1069	8e-25	526 - 585	100	60 / 60	plus
JLOC1	JLOC1_8953.1	1072	8e-25	529 - 588	100	60 / 60	plus
Harvest21	ABC35943	504	3e-25	444 - 503	100	60 / 60	plus
Harvest21	ABC27904	683	1e-23	376 - 435	98	59 / 60	plus
Harvest35	U35_39743	504	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_28824	683	1e-23	376 - 435	98	59 / 60	plus

Contig Sequence (504 bp)

>U35_39743 504 Hv_44K_v2
GCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCGCTGGAGCAGCTCGGAGCCGCGCTT
CGGCGGTGCTATGCTCTCGCCACGGCGTGCCAGGACTGCGGCTACCTCCGCCGCCTGCTC
CTGGGCGCACGGATGGCCGACGAGCTCCGCGCCGCGCAGCACGAGATCGACATGTTCGTC
CGCCTCATCCCGCTCATCGCCCTCGTCGACAATTCGACAAACAGTCGGCGTGCCATGGTC
GAGGAGGGGGTGCTCAGTGTAGTCACAGATAGTTCAAATCATCACGTCAGGTTTCCAACA
AGGGCTTTGGAGTTTACCAAAATACGTGTCCAGGGAGCTACAGAACTTCTCAATGTTCAA
GAACAGCCATTTGTAGGAAAAGTGGACCTGCAAGAACAGAAAATGTCCAACATTGAAGAG
CTTGCAGAGCTCTGTGCCCATATAGAAGCGGCTTGCACGGGATTTGCAAAGTTCAACTTC
TTTCAGATCGTGGATGCTACAAAC

Homology of Contig U35_39743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g47470.1	458	2e-65	protein\|TKL_IRAK_DUF26-lh.2 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	None
Arabidopsis v10	None