barSeed - Barley Seed Development Database

Probe CUST_29601_PI390587928

Source Contig U35_15797

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29601_PI390587928	Hv_44K_v2	CCCTCTGTCCCAAAATAGCCGTCTTAACTTTATACTTACTCTAGTACATAGTTATTCTAA	473	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58930.3	1233	2e-24	252 - 311	100	60 / 60	minus	ABC04051
MLOC	MLOC_58930.4	1448	2e-24	245 - 304	100	60 / 60	minus	ABC04046 ABC04051 ABC04052
JLOC1	JLOC1_38314.1	2414	8e-25	1441 - 1500	100	60 / 60	minus
Harvest35	U35_15797	1136	3e-25	474 - 533	100	60 / 60	plus

Contig Sequence (1136 bp)

>U35_15797 1136 Hv_44K_v2
ACTTGTTATTATTGTGTTGCATTGTTACCAGAGACGTAGAACAAAATTTGGCCCACATGT
TCCTTTATGCTCTGAATGTTTAGCAGTTTCGAACCATCAATTAAGCTACATTGTTGGCAT
TAAGTGGATTGCATGAAACAGTTTTGCACTATTTCGGTTTTACCTTCGGTTTAAACGAGT
CTCACTTTCTCATGGTCACTTGTATTTGTTGATTTCAAGTATTTTCTTCAGGGAAAGAAA
ACATCAGTAGTCCCTTGCTTTCTTCCCTTTCCCAGTTTGCAAATTGGGATTACATTCAAA
TTTTAAACTGATTCGCTATGGGTAACAATGAACAGACCTTGTCACGTGGGTCAGGTTAAT
TAGTTTATTTGTGTATAGTTACCAGAACCGTATATGTTTTTGGTAGGATCTGAATGTGTA
GCAGTTTGGAACCTTTAAGCTACTGTTTTGGGGTTAAGCAGATGTCATGTACTCCCTCTG
TCCCAAAATAGCCGTCTTAACTTTATACTTACTCTAGTACATAGTTATTCTAAAGTTGAG
ACACTTATTTTGGGACATAGGGAGTATCAGTTTAGTGCTACTTTGGTGTCAGTCTTTGAT
TAGACATGGCATGCTCTGTCCAGTATTTGTTGGTTGTAAGGATTAGCTTCGCTCTGCTTT
GGAATGCCTGATATTAGATGTCACGTGGTTGCAAAAATATCTTTGTCTGAGCTTTCTATG
CAGATATTGCTCTACTTATTTGATTTACACACTACTTCTCTAGCATCCTAGATAATCCTA
GATGTTCAGTAAACTAACAATGTTTTCTCTCTTCTATGAGATGCACTTCCTTGCATCATT
CCAGAAAGCACAGGAGGAGAAGCTATTCTTACTTAGAATCTGATACTGAATCAGAAGTGA
CAGTGATCGTAAACACAGGAAGAGGAAGGACCGCAAAAGGCACATGAAACATGGCCACTC
TGACTCTGATGGTGCCAGGAGGCGCAAGCATAGGTCAAAGAGGAGGTATTCACACTCTAG
TGATGAGAGTGACAGCGATAACTACAGTAGTGAATCTAAAGAAAATATACATTGTATTGT
ATATGCTACTGAAATAAAATATACATTTTCTTTGCAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None