barSeed - Barley Seed Development Database

Probe CUST_29361_PI390587928

Source Contig U35_16284

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29361_PI390587928	Hv_44K_v2	ATGTACTAATATGTAGCAACGACATGGTAGAATTTCACATCATGAAAGACCTTGATGCTC	668	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367079	859	2e-24	733 - 792	100	60 / 60	plus	ABC04793 ABC17590
MLOC	MLOC_13212.3	1498	7e-23	1257 - 1316	98	59 / 60	plus	ABC04793 ABC17590
MLOC	MLOC_13212.2	697	7e-23	575 - 634	98	59 / 60	plus	ABC04793 ABC17590
JLOC1	JLOC1_8922.2	1749	4e-23	1323 - 1382	98	59 / 60	plus
JLOC1	JLOC1_8922.1	1001	4e-23	575 - 634	98	59 / 60	plus
Harvest21	ABC04794	1053	3e-25	891 - 950	100	60 / 60	plus
Harvest21	ABC04792	830	3e-25	669 - 728	100	60 / 60	plus
Harvest21	ABC04793	855	1e-23	687 - 746	98	59 / 60	plus	ABC04793
Harvest35	U35_16285	868	3e-25	705 - 764	100	60 / 60	plus
Harvest35	U35_16284	728	3e-25	669 - 728	100	60 / 60	plus

Contig Sequence (728 bp)

>U35_16284 728 Hv_44K_v2
TTCCAAGTTCCCCCCATTCCCACGGACAGGCACACCGACCCACGCGCATCTCGCCGCCCG
CCCGCCCGGGGAGCTCCTCCGCCGATCCGCTCGCCCTCCCGCCGCGCCCGCAAACGATGG
AGGAAGCCAAGGTTGTGGAGACCAGGGATGGGACTATCTCAGTTGCCTCCGCGTTTCCCG
GTCATCAGGAAGCCGTACAAGATAGGGATCACAAGTTCTTGTCGAAAGCGGTAGAAGAGG
CTTACAAAGGAGTTGACTGTGGACATGGTGGCCCATTTGGTGCGGTCGTCGTCCGTAATG
ACGAAGTAATAGTTGGTTGCCATAACATGGTTCTGAACAACACCGATCCAACTGCACATG
CTGAAGTCACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAGATTGAGCTGTCGGATT
GCGAAATGTACGCATCATGTGAACCTTGCCCAATGTGTTTTGGGGCTGTTCATCTATCCC
GGATCAAGAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGACG
ACTTCATTGCTGATGCTCTGAGAGGAACTGGGTTCTACCAGAAGGCCAACATGGAGATTA
AGCGAGCCGATGGGAATGGAGCCCTGCTTGCTGAACAAGTCTTTGAGAACACCAAAGAGA
AGTTTCGAATGTACTAATATGTAGCAACGACATGGTAGAATTTCACATCATGAAAGACCT
TGATGCTC

Homology of Contig U35_16284 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61810.1	187	1e-110	protein\|tRNA-specific adenosine deaminase, putative, expressed
Brachypodium v1_2	Bradi1g02710.1	187	3e-112
Arabidopsis v10	AT5G28050.2	204	4e-95	Cytidine/deoxycytidylate deaminase family protein \| chr5:10044209-10045484 REVERSE LENGTH=204