barSeed - Barley Seed Development Database

Probe CUST_29360_PI390587928

Source Contig U35_16285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29360_PI390587928	Hv_44K_v2	CCTTGATGCTCAGAAATAATAATGTAATTGTCAACATTCTGTCATTGGTCATGGACTACA	753	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367079	859	2e-24	782 - 841	100	60 / 60	plus	ABC04793 ABC17590
Harvest21	ABC04794	1053	3e-25	940 - 999	100	60 / 60	plus
Harvest21	ABC04792	830	3e-25	718 - 777	100	60 / 60	plus
Harvest35	U35_16285	868	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_16285 868 Hv_44K_v2
GAGAGAGAACGCACTTTCCTTCCAAGTTCCCCCCATTCCCACGGACAGGCACACCGACCC
ACGCGCATCTCGCCGCCCGCCCGCCCGCCCGCCCGGGGAGCTCCGCCGATCCGCTCGCCC
GCCCGCCCTCCCTCCCTCCGCGCCCGCAAACGATGGAGGAAGCCAAGGTTGTGGAGACCA
GGGATGGGACTATCTCAGTTGCCTCCGCGTTTCCCGGTCATCAGGAAGCCGTACAAGATA
GGGATCACAAGTTCTTGTCGAAAGCGGTAGAAGAGGCTTACAAAGGAGTTGACTGTGGAC
ATGGAGGCCCATTTGGTGCGGTCGTCGTCCGTAATGACGAAGTAATAGTCGGTTGCCATA
ACATGGTTCTGAACAACACCGATCCAACTGCACATGCTGAAGTCACTGCAATAAGAGAGG
CTTGCAAAAAGCTTGGAAAGATTGAGCTGTCGGATTGCGAAATGTACGCATCATGTGAAC
CTTGCCCAATGTGTTTTGGGGCTGTTCATCTATCCCGGATCAAGAGGCTGGTGTATGGAG
CCAAGGCAGAAGCTGCTATTGCCATTGGATTCGACGACTTCATTGCTGATGCTCTGAGAG
GAACTGGGTTCTACCAGAAGGCCAACATGGAGATTAAGCGAGCCGATGGGAATGGAGCCC
TGCTTGCTGAACAAGTCTTTGAGAACACCAAAGAGAAGTTTCGAATGTACTAATATGTAG
CAACGACATGGTAGAATTTCACATCATGAAAGACCTTGATGCTCAGAAATAATAATGTAA
TTGTCAACATTCTGTCATTGGTCATGGACTACAAACTATCGATTTGAATATACCATTTGA
TTTATCATTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61810.1	187	6e-110	protein\|tRNA-specific adenosine deaminase, putative, expressed
Brachypodium v1_2	Bradi1g02710.1	187	2e-111
Arabidopsis v10	AT5G28050.2	204	2e-94	Cytidine/deoxycytidylate deaminase family protein \| chr5:10044209-10045484 REVERSE LENGTH=204