barSeed - Barley Seed Development Database

Probe CUST_2918_PI390587928

Source Contig U35_483

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2918_PI390587928	Hv_44K_v2	CTACCTGAGACTATGTTTTGATGATGGTTGTGGTGATGTAACAGATGTTAAACTTTAGAT	2785	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_360.3	3683	7e-23	1091 - 1150	98	59 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.2	3954	7e-23	1262 - 1321	98	59 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_360.6	2927	7e-23	335 - 394	98	59 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
JLOC1	JLOC1_229.2	3541	4e-23	2600 - 2659	98	59 / 60	plus
Harvest21	ABC00413	2889	3e-25	2754 - 2813	100	60 / 60	plus	ABC00413
Harvest21	ABC30000	365	1e-23	260 - 319	98	59 / 60	plus
Harvest21	ABC01003	2033	1e-23	116 - 175	98	59 / 60	minus	ABC01003
Harvest21	ABC00860	2000	1e-23	1885 - 1944	98	59 / 60	plus
Harvest35	U35_483	2975	3e-25	2786 - 2845	100	60 / 60	plus
Harvest35	U35_38763	715	5e-23	152 - 210	98	59 / 60	minus

Contig Sequence (2975 bp)

>U35_483 2975 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCTAGGTGCTCACTTCCTTGAACCCTTTCCATTCTCACGG
ATCGGGAGCGCCGCCGCTTCCCCACCTCTCATCTCTCGCCTCGGGAGACGGAGGCCAGAC
CCCAAGGAACTATATTCCCAGCTTGACATTCAAAATCAGCCAAGATGGTGAAGTTTACCG
CGGAGGAGCTCCGCGGAATTATGGACAAGAAAAATAATATTCGTAACATGTCTGTTATTG
CTCATGTCGACCACGGCAAGTCTACGCTTACGGATTCCCTTGTGGCAGCTGCTGGGATTA
TCGCCCAGGAAGTTGCTGGGGATGTTCGCATGACTGATACCCGTGCAGATGAGGCAGAGC
GTGGTATTACAATCAAATCCACGGGTATCTCTCTTTTCTATCAGATGACTCCTGAATCAC
TTGAGATGTACAAGGGTGACAGGGATGGGGATGAATACCTGATCAACCTTATTGATTCAC
CTGGCCACGTTGACTTTTCTTCGGAAGTCACAGCTGCTCTTCGTATCACTGATGGTGCCT
TGGTTGTTGTTGACTGTATTGAGGGTGTCTGTGTGCAGACCGAAACTGTGCTGCGCCAAG
CTCTTGGTGAGAGGATTAGGCCTGTTCTTACTGTGAACAAGATGGACAGATGCTTTCTCG
AGCTTCAGTTTGAAGGTGAGGAAGCATACCAGACTTTCTCCCGTGTCATTGAAAATGCCA
ATGTCATCATGGCAACATATGAAGATGTGCTCCTTGGTGATGTCCAAGTGTACCCAGAGA
AGGGGACTGTTGCATTCTCTGCTGGTTTGCATGGGTGGGCTTTCACCCTTACAAACTTTG
CTAAGATGTATGCCTCCAAGTTTGGAGTTGATGAGGTGAAGATGATGGAGAGGCTGTGGG
GTGAGAACTTCTTTGACCCAGCCACAAAGAAATGGACCTCCAAGAACACTGGGACAGCTA
CCTGCAAGAGAGGATTCGTTCAGTTCTGCTACGAGCCAATCAAGCAAATCATAGCCACCT
GCATGAATGACCAGAAGGATAAGTTGTGGCCTATGTTGAAGAAGCTTGGTGTGACCATGA
AGAATGATGAGAAGGACTTGATGGGAAAGGCTCTCATGAAGCGTGTGATGCAAACTTGGC
TGCCTGCCAGTCGTGCTCTGCTTGAGATGATGATCTTTCACCTCCCCTCTCCTTCAAAGG
CACAGAGGTACCGTGTGGAGAACTTATACGAGGGTCCCCTTGATGACATATATGCAAATG
CTATCAGAAACTGTGACCCTGATGGTCCTCTTATGCTGTATGTCTCCAAGATGATTCCAG
CATCTGACAAGGGTAGATTCTTTGCCTTTGGACGTGTCTTTGCTGGGAGGGTCGCAACTG
GCATGAAGGTCCGTATCATGGGTCCCAACTTTGTTCCTGGCCAGAAGAAGGATCTATATG
TGAAGAGTGTCCAGCGGACTGTTATCTGGATGGGAAAGAAGCAAGAGTCTGTTGAGGATG
TTCCCTGTGGTAACACTGTTGCTTTGGTTGGTTTGGATCAGTTCATCACGAAGAATGCAA
CCCTGACAAACGAGAAGGAAGTTGATGCCTGCCCAATCAGGGCAATGAAGTTCTCCGTGT
CCCCTGTTGTGCGTGTTGCTGTCCAGTGCAAGACGGCTTCTGATCTTCCTAAGCTTGTGG
AGGGTTTGAAGCGTCTGGCAAAGTCTGATCCTATGGTTCTCTGTACCATTGAAGAGTCTG
GTGAGCATATCATTGCTGGAGCTGGAGAGCTTCACCTTGAAATTTGCTTGAAGGATCTGC
AGGATGACTTCATGGGTGGTGCTGAAATTATTGTTTCCCCTCCTGTCGTCTCCTTCCGTG
AGACTGTTCTTGAGAAGTCCTGCCGTACAGTTATGAGCAAGTCCCCCAACAAGCACAACC
GTCTTTACATGGAAGCTCGCCCATTGGAGGAGGGATTGGCTGAGGCTATCGATGATGGCC
GCATTGGCCCACGTGATGATCCCAAGGTCCGCTCCAAGATCCTATCTGAGGAGTTTGGTT
GGGACAAGGATCTCGCCAAGAAGATTTGGTGCTTTGGACCTGAGACGACTGGCCCGAACA
TGGTTGTTGACATGTGTAAGGGAGTGCAGTACCTGAATGAAATCAAGGACTCTGTTGTGG
CTGGGTTCCAGTGGGCGTCAAAGGAAGGAGCACTATGTGAGGAGAACATGCGTGGCATTT
GCTACGAGGTCTGCGATGTGGTTCTCCACACTGATGCTATTCACAGGGGTGGTGGTCAGG
TCATCCCAACGGCGAGGAGGGTCATTTACGCTTCTCAGCTCACTGCCAAGCCAAGGCTGC
TGGAGCCTGTGTACCTGGTTGAGATCCAGGCGCCGGAGAATGCGCTTGGTGGTATCTATG
GTGTGCTGAATCAGAAGAGAGGACACGTGTTTGAGGAGATGCAGAGGCAAGGTACCCCAC
TCTACAACATCAAGGCCTACCTGCCTGTCATCGAGTCCTTCGGGTTCTCGAGCACCCTCA
GGGCTGCGACGTCCGGCCAGGCCTTCCCCCAGTGTGTGTTTGATCACTGGGACATCATGG
CTTCTGATCCTTTGGACCCCGGCACCCAGTCTGCGACGCTTGTGACGGAGATCCGCAAGA
GGAAGGGTCTCAAGGAGCAGATGACTCCCCTATCCGATTTCGAGGACAAGCTCTAAATTT
TGGGTAATGTTTTGCTACTTGCCCTTGCTGTGAAGGGAGCCGCATTATTTTCTCCCGATG
TGTATCTTGCTGTTTGTATGTGGTGCTACCTGAGACTATGTTTTGATGATGGTTGTGGTG
ATGTAACAGATGTTAAACTTTAGATCATATATATATCTGTCATCAGATTGTGGATCTTTT
TTTAAAAAAAAAAAAAAAAACCCGTGCTTTGCTTTTGTGCTACATCTTGCTTTCGTTTAC
TGTATTTGACTGTATATTTATTGTTGTCTCTAGCA

Homology of Contig U35_483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g32030.1	844	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44480.1	844
Arabidopsis v10	AT1G56070.1	843	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843