barSeed - Barley Seed Development Database

Probe CUST_29085_PI390587928

Source Contig U35_29935

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29085_PI390587928	Hv_44K_v2	CTAAGGCTGGTTGTAATGGGTAGTATCATATACTAGTATCATGCATATAACACTAGTGTA	299	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377097	5160	2e-24	4971 - 5030	100	60 / 60	plus	ABC09103 ABC16473 ABC38348
MLOC	AK371193	5337	3e-21	1395 - 1454	97	58 / 60	minus	ABC01983 ABC10695 ABC16473 ABC21919 ABC22344 ABC45186
JLOC1	JLOC1_22892.7	1689	8e-25	1530 - 1589	100	60 / 60	plus
JLOC1	JLOC1_22892.6	1752	8e-25	1593 - 1652	100	60 / 60	plus
JLOC1	JLOC1_22892.5	2531	8e-25	2372 - 2431	100	60 / 60	plus
JLOC1	JLOC1_22892.4	2467	8e-25	2308 - 2367	100	60 / 60	plus
JLOC1	JLOC1_22892.3	1739	8e-25	1580 - 1639	100	60 / 60	plus
JLOC1	JLOC1_22892.2	1669	8e-25	1510 - 1569	100	60 / 60	plus
JLOC1	JLOC1_22892.1	722	8e-25	563 - 622	100	60 / 60	plus
Harvest21	ABC29530	402	3e-25	300 - 359	100	60 / 60	plus
Harvest35	U35_29935	402	3e-25	300 - 359	100	60 / 60	plus

Contig Sequence (402 bp)

>U35_29935 402 Hv_44K_v2
AACATATATATGTTACTACTCTATGTTACTCCCTATTGTGAGTAGTCTTATGTCATTTTA
TGCCATTTTGCAGATGCTTGGTTGCTTTGCTGATTCATTTGGCGATTCTTGCAGCATATG
TTTGTCAGAGATTTCCAAATGCCACTGCCAATGGTCTGTTCACCATGTTCTTTGGGATAT
TTACTCACTGCCTTGGCGTATTCCAGTAGATCTGCATGGTCAGCCAACTCACTGCACGCA
TTCAGATGGGTGTTTAATGCCCGTAGTGATGCCTTGTACTTCGTCGGAGATCTGTGCATC
TAAGGCTGGTTGTAATGGGTAGTATCATATACTAGTATCATGCATATAACACTAGTGTAT
GATACCACATTCGTAATGCACTGTATCATATGATAGTATCAT

Homology of Contig U35_29935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None