barSeed - Barley Seed Development Database

Probe ABC09103

Source Contig ABC09103

barSeed

Links

Affymetrix Source Sequence (1604 bp)

>ABC09103 1604
GATCTGGAGTTCGTGTTAATGAGCAGATTGTGCAGCTAGTGCCGAATCAAGAGAAGTTCC
AAATTCTGTTGCGATGCATAAAACTATGGGCTAGGAGGCGGGGACTTCATTGCCATTTGC
TTGGTTCCTTTGCTGGGATTCATTTGGCGATTCTTGCAGCCTATGTTTGTCAGAGATTTC
CAAATGCCACTGCCAATGGTTTGTTCACCATGTTCTTTGGCATATTTGCTCACTGGCCTT
GGCATATTCCAGTAGATCTGCATGGTCAGCCAACTAACTGCAGGCATTCAGATGGGTGTT
TAATGCCCATAGTGATGCCTTGTACTCCGCCGGAACTCTGTGCGTCTAATATGACGGAAG
GTACCTTCAGGAAGATCAGAGAGGAGCTTATGCGTGGTTATGTTTTGACCAAGGACCTAG
GGAGCCATGATTTTGAGTGGGCATGGATTTTTGAACCCTTCCCATATTCAACAACATATG
GACAATTTCTTCGCATTGCTCTATGTGCTCCAACTTCTGAAGAACTGCATGATTGGATTG
GATGGGTTAAATCTCGCTTCCCTTACCTTATTCTCAAGCTGGAAAATATTGGCATTGAGT
GTGACCCCAATTCATCACAGGAAGTTGATCATACAGTCATCAAACCCAACACTGTATATC
ACTGGGGCCTCATCCCTCTGTCTGATGTTTACCTTGATCCTAGCTCTCTGAAGGAAGATT
TCATGAAATATGTCATCAATGATGTGTATGGGAAGGTGAAATGTACAGACTCAGAGCTGA
CAATATCCATCGTCGACGCATCAGAGCTTCCAAAAAGCATGTCCAATGACTCATTTTACT
CCCAGCAGCACCTGCACGAGTATGGGGTGGGCTACCAAGCAGCAGCTGACTGTTGGAGTG
CATTTGGCTAGGATATTGCTGGATCATCTGGCACTTCTTTTGCATCTCATATGCTGATCA
TCGGGCCGACACTGAATCATGTCTGTGGGTTTCTTGTCATCTCCTTATTGCCCCTAGCAA
AGGGAATCTGAAGACCAGTGTTCCAGATGCACTAAGATCATGAAACTGACTTGGTTCTGC
TCTGATGGTTATTCAAGCCCATGTGTAGTACTGGTCAGTATATTGGCATAGCGTCTGACA
AAAAAAAAGGAAAAAAAGTATATCGGTGTTGTGGCTTATAGCAGGTAGAATGTAAAATGT
AGGTTATTGTTTCAAAAAAAATGTAGGTTACTGGAAACCCATTGAAGATGGGGAGGGAAA
AAAAAAGAAGAAAAAAGGTAAAATGTCTACATGAAGGGGGTCCAAGTGCGGGTTTGTGCT
GTGAATTCTGATGCCTGCTGGGTGCAAATCACCCATGGTGCCTGCAACTGCAATGTATAG
TTGATCTCACTAGTGTGCTGCTACATTTTGTAAGCAGAAGAGCGCTTGCCACTGAACAAT
TCTTGTGTGTAACTAATAACTACCCTACTCGTAAGTGCCTGATCTGATGGGGTGGTACTG
AGTAATAAGCTGCAAGTGAAAAAAAATTGTTGAAACTTGTATGTGGTCTTGTTTCGCAGA
GGTGGATGATGCTTGTTAGTAATGTTTTTGTACGTATTTGGTAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_44215.2	2460	0.0	1 - 1566	99	1561 / 1569	None	ABC09103 ABC09104
AK355618	2437	0.0	908 - 2437	99	1525 / 1533	None	ABC09103 ABC09104
MLOC_44215.1	1828	0.0	1 - 1516	99	1511 / 1519	None	ABC09103 ABC09104
AK377097	5160	2e-87	4746 - 4974	92	214 / 232	CUST_29085_PI390587928 CUST_29257_PI390587928	ABC09103 ABC16473 ABC38348
MLOC_14771.1	2336	8e-87	268 - 534	89	239 / 270	CUST_18950_PI390587928	ABC09103 ABC09104
MLOC_35470.4	2463	1e-85	4 - 226	92	209 / 226	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.1	2305	1e-85	4 - 226	92	209 / 226	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.3	1530	1e-85	4 - 226	92	209 / 226	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.5	2364	4e-85	1 - 222	92	208 / 225	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.6	2366	4e-85	1 - 222	92	208 / 225	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.8	1434	1e-84	8 - 213	94	197 / 209	None	ABC09103 ABC38348
MLOC_35470.7	2303	1e-84	15 - 220	94	197 / 209	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.10	1588	1e-84	8 - 213	94	197 / 209	None	ABC09103 ABC38348
MLOC_14772.1	3001	1e-84	394 - 647	89	229 / 257	CUST_18950_PI390587928	ABC09103 ABC09104
MLOC_35470.11	1636	1e-70	1 - 178	94	170 / 181	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.2	2331	5e-69	4 - 188	92	172 / 186	CUST_29257_PI390587928	ABC09103 ABC38348
MLOC_35470.9	657	2e-67	8 - 171	95	157 / 165	None	ABC09103 ABC38348